TIGR Wheat Genome Annotation

Wheat EST Markers Mapped to Rice Pseudomolecules

The Wheat chromosome bin map and corresponding EST marker sequences were downloaded from GrainGenes. The marker sequences were used to search TIGR Rice Pseudomolecules Release 4. Applying a high stringency cutoff of greater than 70% sequence identity and 70% length match or a continuous match of >=150 bp, 9332 wheat markers were mapped onto Rice Pseudomolecules. The top 5 alignments (21438 in total) were retained. Those markers aligned to a unique location on rice genome are denoted with a star(*). Syntenic blocks were determined by calculating the colinear order of wheat markers on the wheat bin map and on the Rice Pseudomolecules.

Search and Browse the Rice-Wheat Alignment Data
Table view of wheat markers searched against the Rice Pseudomolecules. Results can be viewed by selecting rice/wheat chromosomes or by position.
Download Wheat Marker Searching against Rice Pseudomolecules
Download the alignments of the wheat markers with the Rice Pseudomolecules in text-delimited formate.
Rice-Wheat Synteny Figure View
Show the synteny figure by rice/wheat chromosomes using wheat markers searched against the Rice Pseudomolecules.

For Wheat Comments/Questions send mail to the TIGR wheat team.

Photographs courtesy of the USDA Agricultural Research Service