Codes for Plant Repetitive Sequences
Super-class
|
Class
|
Sub-class
|
Code
|
|
|
Transposable Elements
|
Retrotransposons
|
Ty1-copia
|
TERT001
|
|
|
Ty3-gypsy
|
TERT002
|
|
|
LINE
|
TERT003
|
|
|
SINE
|
TERT004
|
|
|
Unclassified
Retrotransposons
|
TERTOOT
|
|
|
|
|
Transposons
|
Ac/Ds
|
TETN001
|
|
|
CACTA, En/Spm
|
TETN002
|
|
|
Mutator (MULE)
|
TETN003
|
|
|
Mariner (MLE)
|
TETN004
|
|
|
ping/pong/SNOOPY
|
TETN005
|
|
|
Unclassified Transposons
|
TETNOOT
|
|
|
|
|
Miniature
inverted-repeat transposable elements
(MITEs)
|
Tourist
|
TEMT001
|
|
|
Stowaway
|
TEMT002
|
|
|
Crackle
|
TEMT003
|
|
|
Explorer
|
TEMT004
|
|
|
Gaijin/Gaigin
|
TEMT005
|
|
|
Castaway
|
TEMT006
|
|
|
Snap
|
TEMT007
|
|
|
Amy/LTP
|
TEMT008
|
|
|
Ditto
|
TEMT009
|
|
|
Wanderer
|
TEMT010
|
|
|
p-SINE1
|
TEMT011
|
|
|
Pop
|
TEMT012
|
|
|
Krispie
|
TEMT013
|
|
|
Snabo
|
TEMT014
|
|
|
MITE-adh, type Aa
|
TEMT015
|
|
|
MITE-adh, type B
|
TEMT016
|
|
|
MITE-adh, type D
|
TEMT017
|
|
|
MITE-adh, type G
|
TEMT018
|
|
|
MITE-adh, type H
|
TEMT019
|
|
|
MITE-adh, type I
|
TEMT020
|
|
|
MITE-adh, type J
|
TEMT021
|
|
|
MITE-adh, type K
|
TEMT022
|
|
|
MITE-adh, type L
|
TEMT023
|
|
|
MITE-adh, type M
|
TEMT024
|
|
|
MITE-adh, type N
|
TEMT025
|
|
|
MITE-adh-1
|
TEMT026
|
|
|
MITE-adh-2
|
TEMT027
|
|
|
MITE-adh-3
|
TEMT028
|
|
|
MITE-adh-4
|
TEMT029
|
|
|
MITE-adh-5
|
TEMT030
|
|
|
MITE-adh-6
|
TEMT031
|
|
|
MITE-adh-7
|
TEMT032
|
|
|
MITE-adh-8
|
TEMT033
|
|
|
MITE-adh-9
|
TEMT034
|
|
|
MITE-adh-10
|
TEMT035
|
|
|
MITE-adh-11
|
TEMT036
|
|
|
MITE-adh-12
|
TEMT037
|
|
|
Buhuib
|
TEMT038
|
|
|
Casin
|
TEMT039
|
|
|
Centre
|
TEMT040
|
|
|
Delay
|
TEMT041
|
|
|
ECR
|
TEMT042
|
|
|
Helia
|
TEMT043
|
|
|
ID-2
|
TEMT044
|
|
|
ID-3
|
TEMT045
|
|
|
ID-4
|
TEMT046
|
|
|
Lier
|
TEMT047
|
|
|
Stola
|
TEMT048
|
|
|
Stone
|
TEMT049
|
|
|
Susu
|
TEMT050
|
|
|
Wuji
|
TEMT051
|
|
|
Youren
|
TEMT052
|
|
|
Micron
|
TEMT053
|
|
|
Truncator
|
TEMT054
|
|
|
Heart breaker
|
TEMT055
|
|
|
Frequent Flyer
|
TEMT056
|
|
|
Heart Healer
|
TEMT057
|
|
|
Acrobat
|
TEMT058
|
|
|
mPIF
|
TEMT059
|
|
|
Pangrangja
|
TEMT060
|
|
|
Kiddo
|
TEMT061
|
|
|
mPing/miniSNOOPY
|
TEMT062
|
|
|
MDM
|
TEMT063
|
|
|
Unclassified MITEs
|
TEMTOOT
|
|
|
|
|
|
Centromere-related sequences
|
Centromere-specific Retrotransposons
|
|
CMCM001
|
|
|
Centromeric satellite repeats
|
|
CMCM002
|
|
|
Unclassified Centromere
Sequences
|
|
CMCMOOT
|
|
|
|
|
|
Telomere-related sequences
|
Telomere
|
|
TRTM000
|
|
|
Telomere-associated
|
|
TRTA000
|
|
|
|
|
|
Ribosomal RNA genes
|
45S rDNA
|
|
RGRR000
|
|
|
5S rDNA
|
|
RGRR005
|
|
|
|
|
|
Unclassified
|
|
|
OTOT000
|
|
a: Ning, J. and Wessler, S.R. Plant Cell 13:2553-2564 2001.
b: Tarchini, R., Biddle, P., Wineland, R., Tingey, S. and Rafalski A. Plant Cell 12:381-391 2000.
For Comments/Questions send mail to The TIGR plant repeat database team.
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