| # | cDNA accession | Aligner | Avg. Percent ID | Percent Aligned | Non-cons. Splice pair | Alignment |
|---|---|---|---|---|---|---|
| 1 | gi|20465964|gb|AY096518.1| Arabidopsis thaliana unknown protein (At2g39960) mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 50296(610)-50426(480)>CT....AC<50514(479)-50656(337)>CT....AC<51487(336)-51568(255)>gt....at<51828(254)-51979(103)>CT....AC<52051(102)-52152(1) | sim4 | 100.0 | 100.0 | at-ac | orient(-) align: 50296(610)-50426(480)>CT....AC<50514(479)-50656(337)>CT....AC<51487(336)-51568(255)>gt....at<51828(254)-51979(103)>CT....AC<52051(102)-52152(1) |
| geneseqer | 100.0 | 100.0 | at-ac | orient(-) align: 50296(610)-50426(480)>CT....AC<50514(479)-50656(337)>CT....AC<51487(336)-51568(255)>gt....at<51828(254)-51979(103)>CT....AC<52051(102)-52152(1) | ||
| 2 | gi|5839978|gb|AI993073.1|AI993073 701495242 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA clone 701495242, mRNA sequence |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 51530(431)-51568(393)>gt....at<51828(392)-51979(241)>CT....AC<52051(240)-52290(1) | sim4 | 100.0 | 100.0 | at-ac | orient(-) align: 51530(431)-51568(393)>gt....at<51828(392)-51979(241)>CT....AC<52051(240)-52290(1) |
| geneseqer | 100.0 | 100.0 | at-ac | orient(-) align: 51530(431)-51568(393)>gt....at<51828(392)-51979(241)>CT....AC<52051(240)-52290(1) | ||
| 3 | gi|17528955|gb|AY065212.1| Arabidopsis thaliana unknown protein (At2g39960) mRNA, complete cds |
blat | 99.9 | 100.0 | at-ac | orient(-) align: 50192(862)-50426(628)>CT....AC<50514(627)-50656(485)>CT....AC<51487(484)-51568(403)>gt....at<51828(402)-51979(251)>CT....AC<52051(250)-52300(1) | sim4 | 99.7 | 100.0 | at-ac | orient(-) align: 50192(862)-50426(628)>CT....AC<50514(627)-50656(485)>CT....AC<51487(484)-51568(403)>gt....at<51828(402)-51979(251)>CT....AC<52051(250)-52300(1) |
| geneseqer | 99.9 | 100.0 | at-ac | orient(-) align: 50192(862)-50426(628)>CT....AC<50514(627)-50656(485)>CT....AC<51487(484)-51568(403)>gt....at<51828(402)-51979(251)>CT....AC<52051(250)-52300(1) | ||
| 4 | gi|19870203|gb|AV828143.1|AV828143 AV828143 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-24-G17 5', mRNA sequence |
blat | 99.4 | 99.8 | at-ac | orient(-) align: 51504(468)-51568(404)>gt....at<51828(403)-51979(252)>CT....AC<52051(251)-52300(2) | sim4 | 98.8 | 100.0 | at-ac | orient(-) align: 51504(468)-51568(404)>gt....at<51828(403)-51979(252)>CT....AC<52051(251)-52301(1) |
| geneseqer | 99.1 | 100.0 | at-ac | orient(-) align: 51504(468)-51568(404)>gt....at<51828(403)-51979(252)>CT....AC<52051(251)-52301(1) | ||
| 5 | gi|5851564|gb|AW004535.1|AW004535 701932082 A. thaliana, mixed source Arabidopsis thaliana cDNA clone 701932082, mRNA sequence |
blat | 99.6 | 100.0 | at-GC | orient(+) align: 30016(1)-30203(187)>at....GC<30735(188)-30746(199)>CT....AC<31024(200)-31078(254) | sim4 | 99.3 | 100.0 | at-GC | orient(+) align: 30016(1)-30203(187)>at....GC<30735(188)-30746(199)>CT....AC<31024(200)-31078(254) |
| geneseqer | 99.6 | 100.0 | at-GC | orient(+) align: 30016(1)-30203(187)>at....GC<30735(188)-30746(199)>CT....AC<31024(200)-31078(254) | ||
| 6 | gi|19698936|gb|AY081315.1| Arabidopsis thaliana 4-alpha-glucanotransferase (At2g40840) mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(+) align: 14937(1)-14982(46)>GT....AG<15161(47)-15526(412)>GT....AG<15620(413)-15737(530)>GT....AG<15848(531)-15903(586)>GT....AG<16004(587)-16131(714)>at....ac<16235(715)-16361(841)>GT....AG<16444(842)-16640(1038)>GT....AG<16964(1039)-17042(1117)>GT....AG<17120(1118)-17158(1156)>GT....AG<17375(1157)-17494(1276)>GT....AG<17617(1277)-17718(1378)>GT....AG<17837(1379)-17920(1462)>GT....AG<18021(1463)-18263(1705)>GT....AG<18339(1706)-18464(1831)>GT....AG<18543(1832)-18617(1906)>GT....AG<18732(1907)-18803(1978)>GT....AG<18944(1979)-19063(2098)>GT....AG<19194(2099)-19291(2196)>GT....AG<19465(2197)-19624(2356)>GT....AG<19713(2357)-19811(2455)>GT....AG<19936(2456)-20133(2653)>GT....AG<20234(2654)-20327(2747)>GT....AG<20406(2748)-20738(3080) | sim4 | 99.9 | 100.0 | tt-AG | orient(+) align: 14937(1)-14982(46)>GT....AG<15161(47)-15526(412)>GT....AG<15620(413)-15737(530)>GT....AG<15848(531)-15903(586)>GT....AG<16004(587)-16137(720)>tt....AG<16241(721)-16361(841)>GT....AG<16444(842)-16640(1038)>GT....AG<16964(1039)-17042(1117)>GT....AG<17120(1118)-17158(1156)>GT....AG<17375(1157)-17494(1276)>GT....AG<17617(1277)-17718(1378)>GT....AG<17837(1379)-17920(1462)>GT....AG<18021(1463)-18263(1705)>GT....AG<18339(1706)-18464(1831)>GT....AG<18543(1832)-18617(1906)>GT....AG<18732(1907)-18803(1978)>GT....AG<18944(1979)-19063(2098)>GT....AG<19194(2099)-19291(2196)>GT....AG<19465(2197)-19624(2356)>GT....AG<19713(2357)-19811(2455)>GT....AG<19936(2456)-20133(2653)>GT....AG<20234(2654)-20327(2747)>GT....AG<20406(2748)-20738(3080) |
| geneseqer | 99.9 | 100.0 | tt-AG | orient(+) align: 14937(1)-14982(46)>GT....AG<15161(47)-15526(412)>GT....AG<15620(413)-15737(530)>GT....AG<15848(531)-15903(586)>GT....AG<16004(587)-16137(720)>tt....AG<16241(721)-16361(841)>GT....AG<16444(842)-16640(1038)>GT....AG<16964(1039)-17042(1117)>GT....AG<17120(1118)-17158(1156)>GT....AG<17375(1157)-17494(1276)>GT....AG<17617(1277)-17718(1378)>GT....AG<17837(1379)-17920(1462)>GT....AG<18021(1463)-18263(1705)>GT....AG<18339(1706)-18464(1831)>GT....AG<18543(1832)-18617(1906)>GT....AG<18732(1907)-18803(1978)>GT....AG<18944(1979)-19063(2098)>GT....AG<19194(2099)-19291(2196)>GT....AG<19465(2197)-19624(2356)>GT....AG<19713(2357)-19811(2455)>GT....AG<19936(2456)-20133(2653)>GT....AG<20234(2654)-20327(2747)>GT....AG<20406(2748)-20738(3080) | ||
| 7 | gi|8333773|gb|BE038850.1|BE038850 AB05A06 AB Arabidopsis thaliana cDNA 5' similar to ribulose bisphosphate carboxylase/oxygenase activase, mRNA sequence |
blat | 98.9 | 99.0 | ga-ca | orient(-) align: 14143(728)-14326(547)>tg....tc<14371(546)-14559(358)>CT....AC<14651(357)-14736(272)>CT....AC<14836(271)-14941(166)>CT....AC<15033(165)-15190(8) | sim4 | 97.3 | 100.0 | GT-cg | orient(-) align: 12373(728)-12386(711)>CT....AC<14162(710)-14323(550)>cg....AC<14367(549)-14559(358)>CT....AC<14651(357)-14736(272)>CT....AC<14836(271)-14941(166)>CT....AC<15033(165)-15196(1) |
| geneseqer | 96.5 | 100.0 | GT-cc | orient(-) align: 14143(728)-14331(536)>gg....AC<14382(535)-14559(358)>CT....AC<14651(357)-14736(272)>CT....AC<14836(271)-14941(166)>CT....AC<15033(165)-15197(1) | ||
| 8 | gi|23303301|gb|BU636046.1|BU636046 044H01 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 99.9 | 100.0 | ct-tt | orient(-) align: 87339(738)-87390(687)>CT....AC<87473(686)-87681(477)>CT....AC<87742(476)-87902(316)>CT....AC<88038(315)-88118(235)>CT....AC<88212(234)-88283(163)>CT....AC<88367(162)-88469(60)>aa....ag<88516(59)-88574(1) | sim4 | 99.3 | 100.0 | GT-tg | orient(-) align: 87339(738)-87390(687)>CT....AC<87473(686)-87681(477)>CT....AC<87742(476)-87902(316)>CT....AC<88038(315)-88118(235)>CT....AC<88212(234)-88283(163)>CT....AC<88367(162)-88472(57)>ca....AC<88519(56)-88574(1) |
| geneseqer | 98.2 | 100.0 | GT-tt | orient(-) align: 87339(738)-87390(687)>CT....AC<87473(686)-87681(477)>CT....AC<87742(476)-87902(316)>CT....AC<88038(315)-88118(235)>CT....AC<88212(234)-88283(163)>CT....AC<88367(162)-88468(57)>aa....AC<88519(56)-88574(1) | ||
| 9 | gi|10277410|gb|BE845032.1|BE845032 AD05H02M13R AD A. thaliana (Col-0 gl1) subtracted library enriched for salt-induced transcripts;10-14 day seedlings 4h 160mM NaCl stress Arabidopsis thaliana cDNA clone AD05H02 similar to T02376 hypothetical protein F6E13.34, mRNA sequence |
blat | 98.9 | 98.2 | aa-AC | orient(+) align: 107577(1)-107808(232)>aa....AC<107998(233)-108205(440) | sim4 | 98.1 | 100.0 | ga-AG | orient(+) align: 107577(1)-107812(237)>ga....AG<108003(238)-108213(448) |
| geneseqer | 98.5 | 100.0 | aa-AG | orient(+) align: 107577(1)-107813(237)>aa....AG<108003(238)-108213(448) | ||
| 10 | gi|22530789|gb|AY116856.1| Arabidopsis thaliana hypothetical protein (At2g41150/T3K9.8) mRNA, complete cds, alternatively spliced |
blat | 99.4 | 99.4 | ga-AG | orient(-) align: 29726(1602)-30303(1025)>CT....AC<30381(1024)-30610(795)>CT....tc<30682(794)-30815(661)>CT....AC<30942(660)-31175(427)>CT....AC<31277(426)-31369(334)>CT....AC<31532(333)-31855(10) | sim4 | 98.9 | 99.8 | ga-AG | orient(-) align: 29726(1603)-30303(1025)>CT....AC<30381(1024)-30610(795)>CT....tc<30682(794)-30815(661)>CT....AC<30942(660)-31175(427)>CT....AC<31277(426)-31369(334)>CT....AC<31532(333)-31861(4) |
| geneseqer | 99.0 | 100.0 | ga-AG | orient(-) align: 29725(1603)-30303(1025)>CT....AC<30381(1024)-30610(795)>CT....tc<30682(794)-30815(661)>CT....AC<30942(660)-31175(427)>CT....AC<31277(426)-31369(334)>CT....AC<31532(333)-31864(1) | ||
| 11 | gi|26449996|dbj|AK117454.1| Arabidopsis thaliana At2g26810 mRNA for unknown protein, complete cds, clone: RAFL17-06-C10 |
blat | 100.0 | 99.7 | at-aa | orient(+) align: 68310(4)-68539(233)>GT....AG<68652(234)-68719(301)>GT....AG<69233(302)-69352(421)>GT....AG<69699(422)-69772(495)>GC....AG<69854(496)-69911(553)>GT....AG<69992(554)-70093(655)>at....aa<70272(656)-70383(767)>GT....AG<70482(768)-70793(1079) | sim4 | 99.7 | 100.0 | at-AG | orient(+) align: 68307(1)-68539(233)>GT....AG<68652(234)-68719(301)>GT....AG<69233(302)-69352(421)>GT....AG<69699(422)-69772(495)>GC....AG<69854(496)-69911(553)>GT....AG<69992(554)-70093(656)>at....AG<70273(657)-70383(767)>GT....AG<70482(768)-70793(1079) |
| geneseqer | 99.7 | 100.0 | ta-AG | orient(+) align: 68307(1)-68539(233)>GT....AG<68652(234)-68719(301)>GT....AG<69233(302)-69352(421)>GT....AG<69699(422)-69772(495)>GC....AG<69854(496)-69911(553)>GT....AG<69992(554)-70094(656)>ta....AG<70273(657)-70383(767)>GT....AG<70482(768)-70793(1079) | ||
| 12 | gi|7671241|gb|AF255297.1|AF255297 Arabidopsis thaliana nuclear poly(A) polymerase mRNA, complete cds |
blat | 99.8 | 100.0 | ac-tg ag-AG GT-at | orient(+) align: 45532(1)-45672(141)>GT....AG<45769(142)-45846(219)>GT....AG<46222(220)-46329(327)>GT....AG<46524(328)-46586(390)>GT....AG<46662(391)-46826(555)>ac....tg<47168(556)-47275(663)>GT....AG<47377(664)-47422(708)>ag....AG<47503(709)-47832(1038)>GT....at<47905(1039)-48075(1209)>GT....AG<48211(1210)-49173(2172)>GT....AG<49257(2173)-49352(2268)>GT....AG<49730(2269)-49849(2388) | sim4 | 99.5 | 100.0 | GT-at | orient(+) align: 45532(1)-45672(141)>GT....AG<45769(142)-45846(219)>GT....AG<46222(220)-46329(327)>GT....AG<46524(328)-46586(390)>GT....AG<46662(391)-46823(552)>GT....AG<47162(553)-47275(663)>GT....AG<47377(664)-47424(708)>GT....AG<47503(709)-47832(1038)>GT....at<47905(1039)-48075(1209)>GT....AG<48211(1210)-49173(2172)>GT....AG<49257(2173)-49352(2268)>GT....AG<49730(2269)-49849(2388) |
| geneseqer | 99.7 | 100.0 | ag-AG GT-at | orient(+) align: 45532(1)-45672(141)>GT....AG<45769(142)-45846(219)>GT....AG<46222(220)-46329(327)>GT....AG<46524(328)-46586(390)>GT....AG<46662(391)-46823(552)>GT....AG<47162(553)-47275(663)>GT....AG<47377(664)-47422(708)>ag....AG<47503(709)-47832(1038)>GT....at<47905(1039)-48075(1209)>GT....AG<48211(1210)-49173(2172)>GT....AG<49257(2173)-49352(2268)>GT....AG<49730(2269)-49849(2388) | ||
| 13 | gi|8723486|gb|AV552073.1|AV552073 AV552073 Arabidopsis thaliana roots Columbia Arabidopsis thaliana cDNA clone RZ20b06R 5', mRNA sequence |
blat | 99.8 | 100.0 | ct-ca | orient(+) align: 20134(1)-20300(167)>ct....ca<20334(168)-20680(514)>GT....AG<21182(515)-21229(562) | sim4 | 99.4 | 100.0 | ct-ac | orient(+) align: 20134(1)-20303(168)>ct....ac<20335(169)-20680(514)>GT....AG<21182(515)-21229(562) |
| geneseqer | 99.8 | 100.0 | ac-tc | orient(+) align: 20134(1)-20299(166)>ac....tc<20333(167)-20680(514)>GT....AG<21182(515)-21229(562) | ||
| 14 | gi|3273199|dbj|AB010917.1| Arabidopsis thaliana mRNA for responce reactor3, complete cds |
blat | 100.0 | 100.0 | at-AG | orient(-) align: 47673(1346)-47897(1122)>CT....AC<47990(1121)-48148(963)>CT....at<48266(962)-48664(564)>CT....AC<48800(563)-48870(493)>CT....AC<49104(492)-49181(415)>CT....AC<49284(414)-49384(314)>CT....AC<49494(313)-49806(1) | sim4 | 99.7 | 100.0 | ga-AG | orient(-) align: 47673(1346)-47897(1122)>CT....AC<47990(1121)-48100(1011)>CT....tc<48218(1010)-48664(564)>CT....AC<48800(563)-48870(493)>CT....AC<49104(492)-49181(415)>CT....AC<49284(414)-49384(314)>CT....AC<49494(313)-49806(1) |
| geneseqer | 100.0 | 100.0 | ga-AG | orient(-) align: 47673(1346)-47897(1122)>CT....AC<47990(1121)-48220(891)>CT....tc<48338(890)-48664(564)>CT....AC<48800(563)-48870(493)>CT....AC<49104(492)-49181(415)>CT....AC<49284(414)-49384(314)>CT....AC<49494(313)-49806(1) | ||
| 15 | gi|8689274|gb|AV528991.1|AV528991 AV528991 Arabidopsis thaliana aboveground organs two to six-week old Arabidopsis thaliana cDNA clone APZL24g03R 5', mRNA sequence |
blat | 100.0 | 100.0 | GT-at | orient(-) align: 100486(512)-100505(493)>at....AC<100583(492)-100657(418)>CT....AC<100746(417)-100913(250)>CT....AC<101068(249)-101190(127)>CT....AC<101353(126)-101442(37)>CT....AC<101562(36)-101597(1) | sim4 | 100.0 | 100.0 | GT-at | orient(-) align: 100486(512)-100505(493)>at....AC<100583(492)-100657(418)>CT....AC<100746(417)-100913(250)>CT....AC<101068(249)-101190(127)>CT....AC<101353(126)-101442(37)>CT....AC<101562(36)-101597(1) |
| geneseqer | 100.0 | 100.0 | GT-at | orient(-) align: 100486(512)-100505(493)>at....AC<100583(492)-100657(418)>CT....AC<100746(417)-100913(250)>CT....AC<101068(249)-101190(127)>CT....AC<101353(126)-101442(37)>CT....AC<101562(36)-101597(1) | ||
| 16 | gi|5846464|gb|AI999559.1|AI999559 701556387 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis thaliana cDNA clone 701556387, mRNA sequence |
blat | 99.4 | 99.5 | gt-at | orient(+) align: 15809(1)-16019(212)>CT....AC<16115(213)-16256(354)>CT....AC<16348(355)-16406(413)>CT....AC<16500(414)-16535(449)>CT....AC<16620(450)-16639(469)>gt....at<16752(470)-16905(624) | sim4 | 98.1 | 100.0 | gt-at | orient(+) align: 15809(1)-16019(212)>CT....AC<16115(213)-16256(354)>CT....AC<16348(355)-16406(413)>CT....AC<16500(414)-16535(449)>CT....AC<16620(450)-16639(469)>gt....at<16752(470)-16907(627) |
| geneseqer | 98.0 | 100.0 | gt-at | orient(+) align: 15809(1)-16019(212)>CT....AC<16115(213)-16256(354)>CT....AC<16348(355)-16406(413)>CT....AC<16500(414)-16535(449)>CT....AC<16620(450)-16639(469)>gt....at<16752(470)-16911(627) | ||
| 17 | gi|19878297|gb|AU239128.1|AU239128 AU239128 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-56-M20 5', mRNA sequence |
blat | 99.4 | 99.8 | at-ac | orient(-) align: 16348(484)-16406(426)>CT....AC<16500(425)-16535(390)>CT....AC<16620(389)-16639(370)>gt....at<16752(369)-16972(149)>CT....AC<17065(148)-17135(78)>CT....AC<17580(77)-17656(1) | sim4 | 99.2 | 100.0 | at-ac | orient(-) align: 16348(485)-16406(426)>CT....AC<16500(425)-16535(390)>CT....AC<16620(389)-16639(370)>gt....at<16752(369)-16972(149)>CT....AC<17065(148)-17135(78)>CT....AC<17580(77)-17656(1) |
| geneseqer | 99.4 | 100.0 | at-ac | orient(-) align: 16256(485)-16256(485)>CT....AC<16348(484)-16406(426)>CT....AC<16500(425)-16535(390)>CT....AC<16620(389)-16639(370)>gt....at<16752(369)-16972(149)>CT....AC<17065(148)-17135(78)>CT....AC<17580(77)-17656(1) | ||
| 18 | gi|7804964|gb|AF255713.1|AF255713 Arabidopsis thaliana putative histone deacetylase HD2d mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 15970(612)-16019(563)>CT....AC<16115(562)-16256(421)>CT....AC<16348(420)-16406(362)>CT....AC<16500(361)-16535(326)>CT....AC<16620(325)-16639(306)>gt....at<16752(305)-16972(85)>CT....AC<17065(84)-17135(14)>CT....AC<17580(13)-17592(1) | sim4 | 100.0 | 100.0 | at-ac | orient(-) align: 15970(612)-16019(563)>CT....AC<16115(562)-16256(421)>CT....AC<16348(420)-16406(362)>CT....AC<16500(361)-16535(326)>CT....AC<16620(325)-16639(306)>gt....at<16752(305)-16972(85)>CT....AC<17065(84)-17135(14)>CT....AC<17580(13)-17592(1) |
| geneseqer | 100.0 | 100.0 | at-ac | orient(-) align: 15970(612)-16019(563)>CT....AC<16115(562)-16256(421)>CT....AC<16348(420)-16406(362)>CT....AC<16500(361)-16535(326)>CT....AC<16620(325)-16639(306)>gt....at<16752(305)-16972(85)>CT....AC<17065(84)-17135(14)>CT....AC<17580(13)-17592(1) | ||
| 19 | gi|5845484|gb|AI998579.1|AI998579 701546228 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis thaliana cDNA clone 701546228, mRNA sequence |
blat | 100.0 | 100.0 | gt-at | orient(+) align: 81989(1)-82197(209)>CT....AC<82279(210)-82343(274)>CT....AC<82427(275)-82512(360)>CT....AC<82638(361)-82727(450)>gt....at<82835(451)-82945(561)>CT....AC<83239(562)-83264(587) | sim4 | 99.2 | 100.0 | CT-aa | orient(+) align: 81989(1)-82197(209)>CT....AC<82279(210)-82343(274)>CT....AC<82427(275)-82512(360)>CT....AC<82638(361)-82723(446)>CT....aa<82829(447)-82945(561)>CT....AC<83239(562)-83264(587) |
| geneseqer | 99.7 | 100.0 | CT-gg | orient(+) align: 81989(1)-82197(209)>CT....AC<82279(210)-82343(274)>CT....AC<82427(275)-82512(360)>CT....AC<82638(361)-82723(446)>CT....gg<82831(447)-82945(561)>CT....AC<83239(562)-83264(587) | ||
| 20 | gi|17473601|gb|AY065091.1| Arabidopsis thaliana unknown protein (At2g39070:At2g39080; T7F6.24:T7F6.25) mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 81934(1244)-82197(981)>CT....AC<82279(980)-82343(916)>CT....AC<82427(915)-82512(830)>CT....AC<82638(829)-82727(740)>gt....at<82835(739)-82945(629)>CT....AC<83239(628)-83332(535)>CT....AC<83573(534)-83745(362)>CT....AC<84028(361)-84140(249)>CT....AC<84369(248)-84616(1) | sim4 | 99.6 | 100.0 | tt-AG | orient(-) align: 81934(1244)-82197(981)>CT....AC<82279(980)-82343(916)>CT....AC<82427(915)-82512(830)>CT....AC<82638(829)-82723(744)>CT....aa<82829(743)-82945(629)>CT....AC<83239(628)-83332(535)>CT....AC<83573(534)-83745(362)>CT....AC<84028(361)-84140(249)>CT....AC<84369(248)-84616(1) |
| geneseqer | 99.8 | 100.0 | cc-AG | orient(-) align: 81934(1244)-82197(981)>CT....AC<82279(980)-82343(916)>CT....AC<82427(915)-82512(830)>CT....AC<82638(829)-82723(744)>CT....gg<82831(743)-82945(629)>CT....AC<83239(628)-83332(535)>CT....AC<83573(534)-83745(362)>CT....AC<84028(361)-84140(249)>CT....AC<84369(248)-84616(1) | ||
| 21 | gi|21386944|gb|AY114557.1| Arabidopsis thaliana unknown protein (At2g39070At2g39080) mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 82035(1109)-82197(947)>CT....AC<82279(946)-82343(882)>CT....AC<82427(881)-82512(796)>CT....AC<82638(795)-82727(706)>gt....at<82835(705)-82945(595)>CT....AC<83239(594)-83332(501)>CT....AC<83573(500)-83745(328)>CT....AC<84028(327)-84140(215)>CT....AC<84369(214)-84582(1) | sim4 | 99.6 | 100.0 | tt-AG | orient(-) align: 82035(1109)-82197(947)>CT....AC<82279(946)-82343(882)>CT....AC<82427(881)-82512(796)>CT....AC<82638(795)-82723(710)>CT....aa<82829(709)-82945(595)>CT....AC<83239(594)-83332(501)>CT....AC<83573(500)-83745(328)>CT....AC<84028(327)-84140(215)>CT....AC<84369(214)-84582(1) |
| geneseqer | 99.8 | 100.0 | cc-AG | orient(-) align: 82035(1109)-82197(947)>CT....AC<82279(946)-82343(882)>CT....AC<82427(881)-82512(796)>CT....AC<82638(795)-82723(710)>CT....gg<82831(709)-82945(595)>CT....AC<83239(594)-83332(501)>CT....AC<83573(500)-83745(328)>CT....AC<84028(327)-84140(215)>CT....AC<84369(214)-84582(1) | ||
| 22 | gi|23303655|gb|BU636400.1|BU636400 005F07 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 100.0 | 100.0 | ga-AG | orient(-) align: 25011(712)-25238(485)>CT....tc<26280(484)-26382(382)>CT....AC<26476(381)-26636(221)>CT....AC<26729(220)-26836(113)>CT....AC<26971(112)-27045(38)>CT....AC<27147(37)-27183(1) | sim4 | 100.0 | 100.0 | ga-AG | orient(-) align: 25011(712)-25238(485)>CT....tc<26280(484)-26382(382)>CT....AC<26476(381)-26636(221)>CT....AC<26729(220)-26836(113)>CT....AC<26971(112)-27045(38)>CT....AC<27147(37)-27183(1) |
| geneseqer | 100.0 | 100.0 | gg-AG | orient(-) align: 25011(712)-25238(485)>CT....AC<26186(484)-26186(484)>CT....cc<26281(483)-26382(382)>CT....AC<26476(381)-26636(221)>CT....AC<26729(220)-26836(113)>CT....AC<26971(112)-27045(38)>CT....AC<27147(37)-27183(1) | ||
| 23 | gi|5845089|gb|AI998184.1|AI998184 701515683 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis thaliana cDNA clone 701515683, mRNA sequence |
blat | 98.9 | 100.0 | CT-tg | orient(+) align: 24782(1)-24998(217)>CT....tg<25042(218)-25333(509)>CT....AC<25414(510)-25440(536) | sim4 | 97.6 | 97.4 | ct-AG | orient(+) align: 24782(1)-25004(222)>ct....AG<25047(223)-25345(522) |
| geneseqer | 95.6 | 100.0 | CT-ga | orient(+) align: 24782(1)-24998(224)>CT....ga<25049(225)-25333(509)>CT....AC<25414(510)-25440(536) | ||
| 24 | gi|5845872|gb|AI998967.1|AI998967 701547760 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis thaliana cDNA clone 701547760, mRNA sequence |
blat | 100.0 | 100.0 | CT-tc | orient(+) align: 74683(1)-75024(342)>CT....AC<75108(343)-75175(410)>CT....AC<75248(411)-75403(566)>CT....tc<75644(567)-75663(586)>CT....AC<75796(587)-75832(623) | sim4 | 100.0 | 100.0 | CT-tc | orient(+) align: 74683(1)-75024(342)>CT....AC<75108(343)-75175(410)>CT....AC<75248(411)-75403(566)>CT....tc<75644(567)-75663(586)>CT....AC<75796(587)-75832(623) |
| geneseqer | 100.0 | 100.0 | CT-tc | orient(+) align: 74683(1)-75024(342)>CT....AC<75108(343)-75175(410)>CT....AC<75248(411)-75403(566)>CT....tc<75644(567)-75663(586)>CT....AC<75796(587)-75832(623) | ||
| 25 | gi|23303873|gb|BU636618.1|BU636618 009A10 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 99.4 | 95.3 | ca-ac ac-gg | orient(+) align: 42738(26)-42817(106)>GT....AG<42909(107)-43102(300)>ca....ac<43259(301)-43276(318)>ac....gg<43423(319)-43486(382)>GT....AG<43564(383)-43663(482)>GT....AG<43741(483)-43785(527) | sim4 | 97.7 | 97.2 | at-AG | orient(+) align: 42731(16)-42817(106)>GT....AG<42909(107)-43105(303)>at....AG<43262(304)-43274(316)>GT....AG<43421(317)-43486(382)>GT....AG<43564(383)-43663(482)>GT....AG<43741(483)-43785(527) |
| geneseqer | 98.6 | 95.3 | at-AG | orient(+) align: 42738(26)-42817(106)>GT....AG<42909(107)-43105(303)>at....AG<43262(304)-43274(316)>GT....AG<43421(317)-43486(382)>GT....AG<43564(383)-43663(482)>GT....AG<43741(483)-43785(527) | ||
| 26 | gi|26019671|gb|CA781638.1|CA781638 031C12AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 99.2 | 99.6 | GT-ca | orient(-) align: 15604(727)-16042(289)>CT....AC<16136(288)-16142(282)>tg....AC<17154(281)-17434(4) | sim4 | 98.8 | 100.0 | at-AG | orient(-) align: 15604(727)-16042(289)>CT....at<17147(288)-17438(1) |
| geneseqer | 99.5 | 100.0 | aa-AG | orient(-) align: 15604(727)-16042(289)>CT....AC<16136(288)-16177(247)>CT....tt<17189(246)-17438(1) | ||
| 27 | gi|2048588|gb|AA395391.1|AA395391 27174 Lambda-PRL2 Arabidopsis thaliana cDNA clone 123C2XP 3', mRNA sequence |
blat | 98.8 | 91.0 | gg-ta | orient(-) align: 80503(467)-80810(160)>ta....cc<80877(159)-80992(43) | sim4 | 96.0 | 94.2 | ca-AC | orient(-) align: 80503(467)-80809(161)>GT....tg<80873(160)-81006(28) |
| geneseqer | 95.6 | 100.0 | GC-cg | orient(-) align: 80503(467)-80808(162)>cg....GC<80875(161)-81003(34)>CT....AC<81341(33)-81379(1) | ||
| 28 | gi|2723128|gb|AA713211.1|AA713211 32771 Lambda-PRL2 Arabidopsis thaliana cDNA clone 246A4T7, mRNA sequence |
blat | 96.8 | 95.3 | ga-cg | orient(-) align: 80556(462)-80739(281)>cg....tc<80830(280)-81003(107)>CT....AC<81341(106)-81446(1) | sim4 | 95.9 | 95.9 | gt-ag | orient(-) align: 80552(465)-80743(276)>GC....AG<80835(275)-81003(107)>ct....ac<81341(106)-81446(1) |
| geneseqer | 95.2 | 100.0 | ag-gg | orient(-) align: 80529(485)-80738(282)>cc....ct<80829(281)-81003(107)>CT....AC<81341(106)-81446(1) | ||
| 29 | gi|2708358|gb|T04011.1|T04011 214 AT-NHC Arabidopsis thaliana cDNA clone B70TP, mRNA sequence |
blat | 99.4 | 100.0 | ga-AG | orient(+) align: 19003(1)-19055(53)>ga....AG<19272(54)-19556(338) | sim4 | 99.4 | 100.0 | ga-AG | orient(+) align: 19003(1)-19055(53)>ga....AG<19272(54)-19556(338) |
| geneseqer | 99.4 | 100.0 | ga-AG | orient(+) align: 19003(1)-19055(53)>ga....AG<19272(54)-19556(338) | ||
| 30 | gi|24417263|gb|AF083683.1| Arabidopsis thaliana clone sps87 unknown mRNA |
blat | 96.2 | 100.0 | ca-AC | orient(-) align: 2471(598)-2899(173)>GT....tg<2960(172)-3131(1) | sim4 | 96.1 | 100.0 | CT-cc | orient(-) align: 2471(598)-2938(134)>gg....AG<2999(133)-3131(1) |
| geneseqer | 96.7 | 100.0 | GT-cg | orient(-) align: 2471(598)-2918(154)>cg....AC<2979(153)-3131(1) | ||
| 31 | gi|12759|emb|X60045.1|MIATNAD5A A.thaliana mitochondrial nad5 gene for NADH dehydrogenase subunit 5, exons a and b |
blat | 99.4 | 100.0 | ga-gg | orient(-) align: 67699(3174)-68450(2427)>cc....tc<68501(2426)-70928(1) | sim4 | 99.0 | 100.0 | GT-at | orient(-) align: 67699(3174)-68448(2429)>at....AC<68498(2428)-70928(1) |
| geneseqer | 99.3 | 100.0 | ga-gg | orient(-) align: 67699(3174)-68450(2427)>cc....tc<68501(2426)-70928(1) | ||
| 32 | gi|23303907|gb|BU636652.1|BU636652 002B07 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 100.0 | 98.8 | GT-tg | orient(-) align: 23472(774)-23491(755)>ca....AC<23718(754)-23976(496)>CT....AC<24250(495)-24735(10) | sim4 | 100.0 | 98.8 | GT-tg | orient(-) align: 23472(774)-23491(755)>ca....AC<23718(754)-23976(496)>CT....AC<24250(495)-24735(10) |
| geneseqer | 100.0 | 98.7 | GT-tg | orient(-) align: 23472(774)-23491(755)>ca....AC<23718(754)-23976(496)>CT....AC<24250(495)-24734(11) | ||
| 33 | gi|8695507|gb|AV535224.1|AV535224 AV535224 Arabidopsis thaliana flower buds Columbia Arabidopsis thaliana cDNA clone FB092h12F 3', mRNA sequence |
blat | 100.0 | 100.0 | ga-tt | orient(+) align: 49372(1)-49771(401)>ga....tt<49851(402)-49898(449) | sim4 | 98.9 | 100.0 | CT-tt | orient(+) align: 49372(1)-49769(399)>CT....tt<49849(400)-49898(449) |
| geneseqer | 99.3 | 100.0 | CT-tt | orient(+) align: 49372(1)-49769(399)>CT....tt<49849(400)-49898(449) | ||
| 34 | gi|26449882|dbj|AK117395.1| Arabidopsis thaliana mRNA, clone: RAFL16-98-C03 |
blat | 100.0 | 100.0 | at-ca | orient(-) align: 14280(427)-14554(153)>CT....AC<14650(152)-14752(50)>tg....at<14798(49)-14846(1) | sim4 | 99.7 | 100.0 | ct-tc | orient(-) align: 14280(427)-14554(153)>CT....AC<14650(152)-14741(61)>ga....ag<14787(60)-14846(1) |
| geneseqer | 97.3 | 100.0 | GT-ca | orient(-) align: 14280(427)-14554(153)>CT....AC<14650(152)-14731(67)>tg....AC<14782(66)-14846(1) | ||
| 35 | gi|16604435|gb|AY058836.1| Arabidopsis thaliana At1g62200/F19K23_13 mRNA, complete cds |
blat | 99.9 | 100.0 | ga-AG | orient(-) align: 43536(1909)-44445(1000)>CT....tc<44533(999)-45098(434)>CT....AC<45184(433)-45401(216)>CT....AC<45485(215)-45608(92)>CT....AC<45769(91)-45859(1) | sim4 | 99.5 | 100.0 | ga-AG | orient(-) align: 43537(1909)-44445(1000)>CT....tc<44533(999)-45098(434)>CT....AC<45184(433)-45401(216)>CT....AC<45485(215)-45608(92)>CT....AC<45769(91)-45859(1) |
| geneseqer | 100.0 | 100.0 | ga-AG | orient(-) align: 43536(1909)-44445(1000)>CT....tc<44533(999)-45098(434)>CT....AC<45184(433)-45401(216)>CT....AC<45485(215)-45608(92)>CT....AC<45769(91)-45859(1) | ||
| 36 | gi|16118436|gb|AY050535.1| Arabidopsis thaliana leucine-rich repeat receptor-like kinase F21M12.36 mRNA, complete cds |
blat | 100.0 | 100.0 | GT-tg | orient(+) align: 139203(1)-141850(2648)>GT....tg<141938(2649)-142540(3251) | sim4 | 99.2 | 100.0 | GT-tg | orient(+) align: 139203(1)-141850(2648)>GT....tg<141938(2649)-142540(3251) |
| geneseqer | 100.0 | 100.0 | GT-tg | orient(+) align: 139203(1)-141850(2648)>GT....tg<141938(2649)-142540(3251) | ||
| 37 | gi|8715347|gb|AV543933.1|AV543933 AV543933 Arabidopsis thaliana roots Columbia Arabidopsis thaliana cDNA clone RZ28e05F 3', mRNA sequence |
blat | 100.0 | 100.0 | cc-AC | orient(-) align: 73304(620)-73354(570)>GT....AG<73512(569)-73724(357)>GT....gg<73854(356)-74055(155)>GT....AG<74183(154)-74336(1) | sim4 | 100.0 | 100.0 | cc-AC | orient(-) align: 73304(620)-73354(570)>GT....AG<73512(569)-73724(357)>GT....gg<73854(356)-74055(155)>GT....AG<74183(154)-74336(1) |
| geneseqer | 100.0 | 100.0 | cc-AC | orient(-) align: 73304(620)-73354(570)>GT....AG<73512(569)-73724(357)>GT....gg<73854(356)-74055(155)>GT....AG<74183(154)-74336(1) | ||
| 38 | gi|2722403|gb|AA712486.1|AA712486 32201 Lambda-PRL2 Arabidopsis thaliana cDNA clone 195H22T7, mRNA sequence |
blat | 95.7 | 100.0 | GT-tg | orient(+) align: 97293(1)-97403(111)>GT....tg<97587(112)-97684(209) | sim4 | 95.1 | 100.0 | GT-tg | orient(+) align: 97293(1)-97403(111)>GT....tg<97587(112)-97684(209) |
| geneseqer | 95.7 | 100.0 | GT-tg | orient(+) align: 97293(1)-97403(111)>GT....tg<97587(112)-97684(209) | ||
| 39 | gi|19876208|gb|AU237039.1|AU237039 AU237039 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-44-G06 5', mRNA sequence |
blat | 99.7 | 99.8 | at-ac | orient(+) align: 121164(1)-121366(203)>GT....AG<121598(204)-121623(229)>at....ac<121950(230)-122378(657) | sim4 | 99.3 | 100.0 | at-ac | orient(+) align: 121164(1)-121366(203)>GT....AG<121598(204)-121623(229)>at....ac<121950(230)-122378(658) |
| geneseqer | 99.5 | 100.0 | ac-ta | orient(+) align: 121164(1)-121366(203)>GT....AG<121598(204)-121618(224)>ac....ta<121945(225)-122379(658) | ||
| 40 | gi|17978864|gb|AY066037.1| Arabidopsis thaliana At1g04130/F20D22_10 mRNA, complete cds |
blat | 100.0 | 100.0 | at-at | orient(-) align: 50503(792)-50576(719)>CT....AC<50677(718)-50769(626)>CT....AC<50856(625)-50979(502)>CT....AC<51267(501)-51345(423)>at....at<51450(422)-51652(220)>CT....AC<51746(219)-51937(28)>CT....AC<52016(27)-52042(1) | sim4 | 100.0 | 100.0 | at-at | orient(-) align: 50503(792)-50576(719)>CT....AC<50677(718)-50769(626)>CT....AC<50856(625)-50979(502)>CT....AC<51267(501)-51345(423)>at....at<51450(422)-51652(220)>CT....AC<51746(219)-51937(28)>CT....AC<52016(27)-52042(1) |
| geneseqer | 100.0 | 100.0 | at-at | orient(-) align: 50503(792)-50576(719)>CT....AC<50677(718)-50769(626)>CT....AC<50856(625)-50979(502)>CT....AC<51267(501)-51345(423)>at....at<51450(422)-51652(220)>CT....AC<51746(219)-51937(28)>CT....AC<52016(27)-52042(1) | ||
| 41 | gi|15809805|gb|AY054170.1| Arabidopsis thaliana At1g04130/F20D22_10 mRNA, complete cds |
blat | 99.8 | 99.9 | at-at | orient(-) align: 50330(1291)-50576(1045)>CT....AC<50677(1044)-50769(952)>CT....AC<50856(951)-50979(828)>CT....AC<51267(827)-51345(749)>at....at<51450(748)-51652(546)>CT....AC<51746(545)-51937(354)>CT....AC<52016(353)-52228(143)>CT....AC<52308(142)-52448(2) | sim4 | 99.5 | 100.0 | at-at | orient(-) align: 50330(1291)-50576(1045)>CT....AC<50677(1044)-50769(952)>CT....AC<50856(951)-50979(828)>CT....AC<51267(827)-51345(749)>at....at<51450(748)-51652(546)>CT....AC<51746(545)-51937(354)>CT....AC<52016(353)-52228(143)>CT....AC<52308(142)-52450(1) |
| geneseqer | 99.7 | 100.0 | at-at | orient(-) align: 50330(1291)-50576(1045)>CT....AC<50677(1044)-50769(952)>CT....AC<50856(951)-50979(828)>CT....AC<51267(827)-51345(749)>at....at<51450(748)-51652(546)>CT....AC<51746(545)-51937(354)>CT....AC<52016(353)-52228(143)>CT....AC<52308(142)-52449(1) | ||
| 42 | gi|8734638|gb|AV563212.1|AV563212 AV563212 Arabidopsis thaliana green siliques Columbia Arabidopsis thaliana cDNA clone SQ183c02F 3', mRNA sequence |
blat | 100.0 | 100.0 | ta-tg | orient(+) align: 81702(1)-81852(151)>ta....tg<81883(152)-81903(172)>CT....AC<82012(173)-82104(265)>CT....AC<82239(266)-82327(354)>CT....AC<82454(355)-82516(417)>CT....AC<82600(418)-82689(507)>CT....AC<82917(508)-82977(568)>CT....AC<83070(569)-83095(594) | sim4 | 99.8 | 100.0 | at-ag | orient(+) align: 81702(1)-81850(149)>at....ag<81880(150)-81903(172)>CT....AC<82012(173)-82104(265)>CT....AC<82239(266)-82327(354)>CT....AC<82454(355)-82516(417)>CT....AC<82600(418)-82689(507)>CT....AC<82917(508)-82977(568)>CT....AC<83070(569)-83095(594) |
| geneseqer | 97.5 | 100.0 | ga-AC | orient(+) align: 81702(1)-81875(172)>ga....AC<82012(173)-82104(265)>CT....AC<82239(266)-82327(354)>CT....AC<82454(355)-82516(417)>CT....AC<82600(418)-82689(507)>CT....AC<82917(508)-82977(568)>CT....AC<83070(569)-83095(594) | ||
| 43 | gi|7110835|gb|AI618764.1|AI618764 EST25 Cloned cDNAs of Arabidopsis thaliana generated by mRNA differential-display RT-PCR Arabidopsis thaliana cDNA clone A44_3 3' similar to Arabidopsis thaliana TYKY mRNA for NADH:ubiquinone oxidoreductase, accession X84318., mRNA sequence |
blat | 100.0 | 99.4 | gg-gg | orient(+) align: 132627(2)-132734(109)>GT....AG<133129(110)-133207(188)>GT....AG<133336(189)-133363(216)>gg....gg<134522(217)-134663(358) | sim4 | 99.0 | 100.0 | ct-aa | orient(+) align: 132626(1)-132734(109)>GT....AG<133129(110)-133207(188)>GT....AG<133336(189)-133369(221)>ct....aa<134527(222)-134663(359) |
| geneseqer | 99.4 | 100.0 | ga-gg | orient(+) align: 132626(1)-132734(109)>GT....AG<133129(110)-133207(188)>GT....AG<133336(189)-133364(217)>ga....gg<134523(218)-134664(359) | ||
| 44 | gi|2619112|gb|AA664499.1|AA664499 EST000013 pi mRNA differential display clones Arabidopsis thaliana cDNA clone Pi27 similar to putative Beta-galactosidase precursor of Dianthus caryophyllus, mRNA sequence |
blat | 99.6 | 96.4 | gg-ac | orient(-) align: 5929(279)-6049(158)>CT....AC<6126(157)-6147(136)>gt....cc<7466(135)-7576(25)>CT....AC<7667(24)-7682(9) | sim4 | 97.7 | 100.0 | gg-ac | orient(-) align: 5926(281)-6049(158)>CT....AC<6126(157)-6147(136)>gt....cc<7466(135)-7576(25)>CT....AC<7667(24)-7691(1) |
| geneseqer | 96.4 | 100.0 | GT-tt | orient(-) align: 5926(281)-6049(158)>CT....AC<6126(157)-6145(138)>aa....AC<7464(137)-7576(25)>CT....AC<7667(24)-7690(1) | ||
| 45 | gi|22652853|gb|AF510525.1| Arabidopsis thaliana SUMO activating enzyme 2 (SAE2) mRNA, complete cds |
blat | 99.9 | 100.0 | aa-aa aa-AG | orient(+) align: 95925(1)-95999(75)>GT....AG<96498(76)-96581(159)>GT....AG<96653(160)-96871(378)>GT....AG<97019(379)-97120(480)>GT....AG<97256(481)-97714(939)>GT....AG<97806(940)-98048(1182)>aa....aa<98138(1183)-98212(1257)>GT....AG<98300(1258)-98458(1416)>aa....AG<98567(1417)-98664(1514)>GT....AG<98890(1515)-99480(2105) | sim4 | 99.3 | 100.0 | ga-AG ct-AG | orient(+) align: 95925(1)-95999(75)>GT....AG<96498(76)-96581(159)>GT....AG<96653(160)-96871(378)>GT....AG<97019(379)-97120(480)>GT....AG<97256(481)-97714(939)>GT....AG<97806(940)-98047(1181)>ga....AG<98136(1182)-98212(1257)>GT....AG<98300(1258)-98460(1416)>ct....AG<98567(1417)-98664(1514)>GT....AG<98890(1515)-99480(2105) |
| geneseqer | 99.8 | 100.0 | tg-AG aa-AG | orient(+) align: 95925(1)-95999(75)>GT....AG<96498(76)-96581(159)>GT....AG<96653(160)-96871(378)>GT....AG<97019(379)-97120(480)>GT....AG<97256(481)-97714(939)>GT....AG<97806(940)-98046(1180)>tg....AG<98136(1181)-98212(1257)>GT....AG<98300(1258)-98458(1416)>aa....AG<98567(1417)-98664(1514)>GT....AG<98890(1515)-99480(2105) | ||
| 46 | gi|26452762|dbj|AK118877.1| Arabidopsis thaliana At1g60000 mRNA for unknown protein, complete cds, clone: RAFL21-20-P18 |
blat | 100.0 | 99.8 | ga-AG | orient(-) align: 21378(452)-21615(215)>CT....tc<22153(214)-22366(1) | sim4 | 99.5 | 100.0 | ga-AG | orient(-) align: 21378(453)-21615(215)>CT....tc<22153(214)-22366(1) |
| geneseqer | 99.8 | 100.0 | ga-AG | orient(-) align: 21377(453)-21615(215)>CT....tc<22153(214)-22366(1) | ||
| 47 | gi|19799811|gb|AU231101.1|AU231101 AU231101 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-20-P18 3', mRNA sequence |
blat | 98.5 | 99.0 | CT-tc | orient(+) align: 21378(2)-21615(238)>CT....tc<22153(239)-22309(395) | sim4 | 97.2 | 100.0 | CT-tc | orient(+) align: 21377(1)-21615(238)>CT....tc<22153(239)-22313(398) |
| geneseqer | 97.5 | 100.0 | GT-ca | orient(+) align: 21377(1)-21617(240)>GT....ca<22155(241)-22313(398) | ||
| 48 | gi|19878929|gb|AU239760.1|AU239760 AU239760 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-20-P18 5', mRNA sequence |
blat | 100.0 | 99.8 | ga-AG | orient(-) align: 21378(452)-21615(215)>CT....tc<22153(214)-22366(1) | sim4 | 99.5 | 100.0 | ga-AG | orient(-) align: 21378(453)-21615(215)>CT....tc<22153(214)-22366(1) |
| geneseqer | 99.8 | 100.0 | ga-AG | orient(-) align: 21377(453)-21615(215)>CT....tc<22153(214)-22366(1) | ||
| 49 | gi|23476965|emb|AJ504805.2|ATH504805 Arabidopsis thaliana mRNA for SMC3 protein |
blat | 100.0 | 99.6 | ct-aa | orient(-) align: 12464(3618)-12826(3256)>CT....AC<12929(3255)-13027(3157)>CT....GC<13453(3156)-13599(3010)>CT....AC<13681(3009)-13849(2841)>CT....AC<14054(2840)-14205(2689)>CT....AC<14277(2688)-14347(2618)>CT....AC<14454(2617)-14637(2434)>CT....AC<14810(2433)-15001(2242)>CT....AC<15103(2241)-15264(2080)>tt....ag<15379(2079)-15521(1937)>CT....AC<15608(1936)-15695(1849)>CT....AC<15819(1848)-16020(1647)>CT....AC<16121(1646)-16257(1510)>CT....AC<16483(1509)-16582(1410)>CT....AC<16662(1409)-16834(1237)>CT....AC<17025(1236)-17169(1092)>CT....AC<17442(1091)-17563(970)>CT....AC<17746(969)-17991(724)>CT....AC<18255(723)-18430(548)>CT....GC<18531(547)-18648(430)>CT....AC<18786(429)-18864(351)>CT....AC<18952(350)-19031(271)>CT....AC<19521(270)-19592(199)>CT....AC<19695(198)-19762(131)>CT....AC<19863(130)-19901(92)>CT....AC<20009(91)-20086(14) | sim4 | 99.7 | 99.6 | ct-aa | orient(-) align: 12464(3618)-12826(3256)>CT....AC<12929(3255)-13027(3157)>CT....AC<13449(3156)-13599(3010)>CT....AC<13681(3009)-13849(2841)>CT....AC<14054(2840)-14205(2689)>CT....AC<14277(2688)-14347(2618)>CT....AC<14454(2617)-14637(2434)>CT....AC<14810(2433)-15001(2242)>CT....AC<15103(2241)-15264(2080)>tt....ag<15379(2079)-15521(1937)>CT....AC<15608(1936)-15695(1849)>CT....AC<15819(1848)-16020(1647)>CT....AC<16121(1646)-16257(1510)>CT....AC<16483(1509)-16582(1410)>CT....AC<16662(1409)-16834(1237)>CT....AC<17025(1236)-17169(1092)>CT....AC<17442(1091)-17563(970)>CT....AC<17746(969)-17991(724)>CT....AC<18255(723)-18430(548)>CT....AC<18527(547)-18648(430)>CT....AC<18786(429)-18864(351)>CT....AC<18952(350)-19031(271)>CT....AC<19521(270)-19592(199)>CT....AC<19695(198)-19762(131)>CT....AC<19863(130)-19901(92)>CT....AC<20009(91)-20086(14) |
| geneseqer | 100.0 | 99.6 | GC-ca | orient(-) align: 12464(3618)-12826(3256)>CT....AC<12929(3255)-13027(3157)>CT....GC<13453(3156)-13599(3010)>CT....AC<13681(3009)-13849(2841)>CT....AC<14054(2840)-14205(2689)>CT....AC<14277(2688)-14347(2618)>CT....AC<14454(2617)-14637(2434)>CT....AC<14810(2433)-15001(2242)>CT....AC<15103(2241)-15262(2082)>tg....GC<15377(2081)-15521(1937)>CT....AC<15608(1936)-15695(1849)>CT....AC<15819(1848)-16020(1647)>CT....AC<16121(1646)-16257(1510)>CT....AC<16483(1509)-16582(1410)>CT....AC<16662(1409)-16834(1237)>CT....AC<17025(1236)-17169(1092)>CT....AC<17442(1091)-17563(970)>CT....AC<17746(969)-17991(724)>CT....AC<18255(723)-18430(548)>CT....GC<18531(547)-18648(430)>CT....AC<18786(429)-18864(351)>CT....AC<18952(350)-19031(271)>CT....AC<19521(270)-19592(199)>CT....AC<19695(198)-19762(131)>CT....AC<19863(130)-19901(92)>CT....AC<20009(91)-20084(16) | ||
| 50 | gi|166656|gb|L04172.1|ATHCCRA Arabidopsis thaliana Ccr2 mRNA, partial ORF |
blat | 99.9 | 98.8 | GT-at | orient(+) align: 9667(12)-9951(295)>GT....at<10100(296)-10728(924) | sim4 | 99.7 | 98.8 | GT-at | orient(+) align: 9667(12)-9951(295)>GT....at<10100(296)-10728(924) |
| geneseqer | 99.7 | 98.8 | at-AG | orient(+) align: 9667(12)-9947(291)>at....AG<10095(292)-10728(924) | ||
| 51 | gi|5844853|gb|AI997948.1|AI997948 701671621 A. thaliana, Columbia Col-0, rosette-1 Arabidopsis thaliana cDNA clone 701671621, mRNA sequence |
blat | 99.5 | 100.0 | tt-tc | orient(-) align: 28477(578)-28691(361)>ga....aa<28803(360)-28899(264)>GT....AG<28991(263)-29073(181)>GT....AG<29270(180)-29449(1) | sim4 | 98.5 | 100.0 | CT-tc | orient(-) align: 28477(578)-28691(361)>ga....AG<28804(360)-28899(264)>GT....AG<28991(263)-29073(181)>GT....AG<29270(180)-29449(1) |
| geneseqer | 98.4 | 100.0 | CT-tt | orient(-) align: 28477(578)-28692(360)>aa....AG<28804(359)-28899(264)>GT....AG<28991(263)-29073(181)>GT....AG<29270(180)-29449(1) | ||
| 52 | gi|402996|gb|Z26394.1|Z26394 ATTS1520 Grenoble-B Arabidopsis thaliana cDNA clone GBGe70, mRNA sequence |
blat | 98.2 | 100.0 | at-AG | orient(-) align: 31987(396)-32321(63)>CT....at<34187(62)-34247(1) | sim4 | 97.5 | 100.0 | at-AG | orient(-) align: 31987(396)-32321(63)>CT....at<34187(62)-34247(1) |
| geneseqer | 97.2 | 100.0 | at-AG | orient(-) align: 31987(396)-32321(63)>CT....at<34187(62)-34247(1) | ||
| 53 | gi|315728|gb|T04568.1|T04568 615 Lambda-PRL2 Arabidopsis thaliana cDNA clone 40A9T7, mRNA sequence |
blat | 97.7 | 100.0 | at-AG | orient(-) align: 31998(390)-32321(69)>CT....at<34187(68)-34254(1) | sim4 | 96.7 | 100.0 | at-AG | orient(-) align: 31998(390)-32321(69)>CT....at<34187(68)-34254(1) |
| geneseqer | 97.2 | 100.0 | at-AG | orient(-) align: 31998(390)-32321(69)>CT....at<34187(68)-34254(1) | ||
| 54 | gi|17472|gb|Z18380.1|Z18380 ATTS0754 Grenoble-B Arabidopsis thaliana cDNA clone GBGa292 5', mRNA sequence |
blat | 98.1 | 100.0 | at-AG | orient(-) align: 32120(262)-32321(62)>CT....at<34187(61)-34247(1) | sim4 | 97.5 | 100.0 | at-AG | orient(-) align: 32120(262)-32321(62)>CT....at<34187(61)-34247(1) |
| geneseqer | 98.1 | 100.0 | at-AG | orient(-) align: 32120(262)-32321(62)>CT....at<34187(61)-34247(1) | ||
| 55 | gi|2596239|gb|T21114.1|T21114 3122 Lambda-PRL2 Arabidopsis thaliana cDNA clone 90F10T7, mRNA sequence |
blat | 96.1 | 98.5 | at-AG | orient(-) align: 32185(206)-32321(71)>CT....at<34187(70)-34253(4) | sim4 | 95.0 | 100.0 | at-AG | orient(-) align: 32185(206)-32321(71)>CT....at<34187(70)-34255(1) |
| geneseqer | 95.2 | 100.0 | at-AG | orient(-) align: 32185(206)-32321(71)>CT....at<34187(70)-34256(1) | ||
| 56 | gi|937080|gb|R30422.1|R30422 13027 Lambda-PRL2 Arabidopsis thaliana cDNA clone 161N13T7, mRNA sequence |
blat | 97.2 | 98.8 | at-AG | orient(-) align: 32069(319)-32321(66)>CT....at<34187(65)-34251(1) | sim4 | 96.8 | 100.0 | at-AG | orient(-) align: 32066(323)-32321(66)>CT....at<34187(65)-34251(1) |
| geneseqer | 95.9 | 100.0 | at-AG | orient(-) align: 32065(323)-32321(66)>CT....at<34187(65)-34251(1) | ||
| 57 | gi|311338|emb|X71915.1|ATGBGA476 A.thaliana mRNA (clone GBGa476) coding for unknown product |
blat | 99.1 | 100.0 | at-AG | orient(-) align: 31049(1335)-32321(62)>CT....at<34187(61)-34247(1) | sim4 | 98.9 | 100.0 | at-AG | orient(-) align: 31049(1335)-32321(62)>CT....at<34187(61)-34247(1) |
| geneseqer | 99.0 | 100.0 | at-AG | orient(-) align: 31049(1335)-32321(62)>CT....at<34187(61)-34247(1) | ||
| 58 | gi|2759720|gb|T44934.1|T44934 8197 Lambda-PRL2 Arabidopsis thaliana cDNA clone 127F22T7, mRNA sequence |
blat | 95.5 | 100.0 | at-AG | orient(-) align: 32147(243)-32321(69)>CT....at<34187(68)-34254(1) | sim4 | 95.3 | 100.0 | at-AG | orient(-) align: 32147(243)-32321(69)>CT....at<34187(68)-34254(1) |
| geneseqer | 95.4 | 100.0 | at-AG | orient(-) align: 32147(243)-32321(69)>CT....at<34187(68)-34254(1) | ||
| 59 | gi|2596245|gb|T21120.1|T21120 3128 Lambda-PRL2 Arabidopsis thaliana cDNA clone 90G10T7, mRNA sequence |
blat | 96.9 | 100.0 | at-AG | orient(-) align: 32132(287)-32321(98)>CT....at<34187(97)-34283(1) | sim4 | 96.0 | 100.0 | at-AG | orient(-) align: 32132(287)-32321(98)>CT....at<34187(97)-34283(1) |
| geneseqer | 96.8 | 100.0 | at-AG | orient(-) align: 32132(287)-32321(98)>CT....at<34187(97)-34283(1) | ||
| 60 | gi|5845465|gb|AI998560.1|AI998560 701546179 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis thaliana cDNA clone 701546179, mRNA sequence |
blat | 99.8 | 100.0 | CT-ct | orient(+) align: 30417(1)-30586(170)>CT....ct<30804(171)-30869(237)>CT....AC<30949(238)-31063(352)>CT....AC<31146(353)-31288(495) | sim4 | 99.0 | 100.0 | CT-aa | orient(+) align: 30417(1)-30592(176)>CT....aa<30810(177)-30869(237)>CT....AC<30949(238)-31063(352)>CT....AC<31146(353)-31288(495) |
| geneseqer | 99.4 | 100.0 | CT-ct | orient(+) align: 30417(1)-30586(170)>CT....ct<30804(171)-30869(237)>CT....AC<30949(238)-31063(352)>CT....AC<31146(353)-31288(495) | ||
| 61 | gi|20453159|gb|AY094450.1| Arabidopsis thaliana At1g24050/T23E23_11 mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(+) align: 81499(1)-81689(191)>at....ac<81796(192)-81961(357)>GT....AG<82057(358)-82137(438)>GT....AG<82622(439)-82745(562)>GT....AG<82877(563)-83251(937) | sim4 | 99.6 | 100.0 | at-AG | orient(+) align: 81499(1)-81691(194)>at....AG<81799(195)-81961(357)>GT....AG<82057(358)-82137(438)>GT....AG<82622(439)-82745(562)>GT....AG<82877(563)-83251(937) |
| geneseqer | 99.8 | 100.0 | tc-AG | orient(+) align: 81499(1)-81692(194)>tc....AG<81799(195)-81961(357)>GT....AG<82057(358)-82137(438)>GT....AG<82622(439)-82745(562)>GT....AG<82877(563)-83251(937) | ||
| 62 | gi|8725039|gb|AV553626.1|AV553626 AV553626 Arabidopsis thaliana roots Columbia Arabidopsis thaliana cDNA clone RZ68a04R 5', mRNA sequence |
blat | 100.0 | 100.0 | at-ac | orient(+) align: 81539(1)-81689(151)>at....ac<81796(152)-81961(317)>GT....AG<82057(318)-82116(377) | sim4 | 100.0 | 100.0 | at-ac | orient(+) align: 81539(1)-81689(151)>at....ac<81796(152)-81961(317)>GT....AG<82057(318)-82116(377) |
| geneseqer | 99.5 | 100.0 | tc-AG | orient(+) align: 81539(1)-81692(154)>tc....AG<81799(155)-81961(317)>GT....AG<82057(318)-82116(377) | ||
| 63 | gi|22137113|gb|AY133572.1| Arabidopsis thaliana At1g24050/T23E23_11 mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(+) align: 81536(1)-81689(154)>at....ac<81796(155)-81961(320)>GT....AG<82057(321)-82137(401)>GT....AG<82622(402)-82745(525)>GT....AG<82877(526)-82918(567) | sim4 | 99.4 | 100.0 | at-AG | orient(+) align: 81536(1)-81691(157)>at....AG<81799(158)-81961(320)>GT....AG<82057(321)-82137(401)>GT....AG<82622(402)-82745(525)>GT....AG<82877(526)-82918(567) |
| geneseqer | 99.6 | 100.0 | tc-AG | orient(+) align: 81536(1)-81692(157)>tc....AG<81799(158)-81961(320)>GT....AG<82057(321)-82137(401)>GT....AG<82622(402)-82745(525)>GT....AG<82877(526)-82918(567) | ||
| 64 | gi|19919845|gb|AF490589.1| Arabidopsis thaliana Na+/H+ exchanger 5 (NHX5) mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac at-ac | orient(-) align: 64851(1554)-64938(1467)>CT....AC<65027(1466)-65148(1345)>CT....AC<65232(1344)-65315(1261)>CT....AC<65442(1260)-65551(1151)>CT....AC<65647(1150)-65744(1053)>CT....AC<65843(1052)-65862(1033)>CT....AC<65964(1032)-66039(957)>CT....AC<66133(956)-66230(859)>CT....AC<66323(858)-66383(798)>CT....AC<66470(797)-66517(750)>CT....AC<66630(749)-66661(718)>gt....at<66743(717)-66771(689)>CT....AC<67191(688)-67288(591)>CT....AC<67371(590)-67390(571)>CT....AC<67512(570)-67574(508)>CT....AC<67683(507)-67794(396)>CT....AC<67873(395)-67958(310)>CT....AC<68033(309)-68057(285)>gt....at<68160(284)-68219(225)>CT....AC<68303(224)-68354(173)>CT....AC<68444(172)-68615(1) | sim4 | 99.8 | 100.0 | at-ac at-AG | orient(-) align: 64851(1554)-64938(1467)>CT....AC<65027(1466)-65148(1345)>CT....AC<65232(1344)-65315(1261)>CT....AC<65442(1260)-65551(1151)>CT....AC<65647(1150)-65744(1053)>CT....AC<65843(1052)-65862(1033)>CT....AC<65964(1032)-66039(957)>CT....AC<66133(956)-66230(859)>CT....AC<66323(858)-66383(798)>CT....AC<66470(797)-66517(750)>CT....AC<66630(749)-66661(718)>gt....at<66743(717)-66771(689)>CT....AC<67191(688)-67288(591)>CT....AC<67371(590)-67390(571)>CT....AC<67512(570)-67574(508)>CT....AC<67683(507)-67794(396)>CT....AC<67873(395)-67958(310)>CT....AC<68033(309)-68053(289)>CT....at<68158(288)-68219(225)>CT....AC<68303(224)-68354(173)>CT....AC<68444(172)-68615(1) |
| geneseqer | 100.0 | 100.0 | at-ac at-ac | orient(-) align: 64851(1554)-64938(1467)>CT....AC<65027(1466)-65148(1345)>CT....AC<65232(1344)-65315(1261)>CT....AC<65442(1260)-65551(1151)>CT....AC<65647(1150)-65744(1053)>CT....AC<65843(1052)-65862(1033)>CT....AC<65964(1032)-66039(957)>CT....AC<66133(956)-66230(859)>CT....AC<66323(858)-66383(798)>CT....AC<66470(797)-66517(750)>CT....AC<66630(749)-66661(718)>gt....at<66743(717)-66771(689)>CT....AC<67191(688)-67288(591)>CT....AC<67371(590)-67390(571)>CT....AC<67512(570)-67574(508)>CT....AC<67683(507)-67794(396)>CT....AC<67873(395)-67958(310)>CT....AC<68033(309)-68057(285)>gt....at<68160(284)-68219(225)>CT....AC<68303(224)-68354(173)>CT....AC<68444(172)-68615(1) | ||
| 65 | gi|23303264|gb|BU636009.1|BU636009 044C01 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 98.7 | 100.0 | aa-AG | orient(-) align: 60411(790)-60466(735)>CT....AC<60550(734)-60590(694)>CT....tt<60679(693)-60986(386)>CT....AC<61104(385)-61303(185)>CT....AC<61465(184)-61649(1) | sim4 | 97.9 | 100.0 | ct-AG | orient(-) align: 60411(790)-60466(735)>CT....AC<60550(734)-60599(686)>CT....ag<60687(685)-60986(386)>CT....AC<61104(385)-61303(185)>CT....AC<61465(184)-61649(1) |
| geneseqer | 98.2 | 100.0 | ca-AG | orient(-) align: 60411(790)-60466(735)>CT....AC<60550(734)-60593(691)>CT....tg<60682(690)-60986(386)>CT....AC<61104(385)-61303(185)>CT....AC<61465(184)-61649(1) | ||
| 66 | gi|8721714|gb|AV550301.1|AV550301 AV550301 Arabidopsis thaliana roots Columbia Arabidopsis thaliana cDNA clone RZ110e10R 5', mRNA sequence |
blat | 99.6 | 100.0 | GT-tg | orient(+) align: 75009(1)-75181(173)>GT....tg<77383(174)-77470(260)>GT....AG<77547(261)-77850(564) | sim4 | 99.5 | 100.0 | GT-tg | orient(+) align: 75009(1)-75181(173)>GT....tg<77383(174)-77470(260)>GT....AG<77547(261)-77850(564) |
| geneseqer | 99.6 | 100.0 | GT-tg | orient(+) align: 75009(1)-75181(173)>GT....tg<77383(174)-77470(260)>GT....AG<77547(261)-77850(564) | ||
| 67 | gi|8333608|gb|BE038592.1|BE038592 AB01F04 AB Arabidopsis thaliana cDNA 5', mRNA sequence |
blat | 99.6 | 99.9 | ga-AG | orient(+) align: 76422(1)-76483(62)>GT....AG<76795(63)-76932(200)>GT....AG<77029(201)-77266(438)>GT....AG<77358(439)-77470(551)>GT....AG<77547(552)-77653(658)>ga....AG<77877(659)-77940(722) | sim4 | 99.4 | 100.0 | ga-AG | orient(+) align: 76422(1)-76483(62)>GT....AG<76795(63)-76932(200)>GT....AG<77029(201)-77266(438)>GT....AG<77358(439)-77470(551)>GT....AG<77547(552)-77653(658)>ga....AG<77877(659)-77940(723) |
| geneseqer | 99.4 | 100.0 | ac-AG | orient(+) align: 76422(1)-76483(62)>GT....AG<76795(63)-76932(200)>GT....AG<77029(201)-77266(438)>GT....AG<77358(439)-77470(551)>GT....AG<77547(552)-77649(654)>ac....AG<77873(655)-77941(723) | ||
| 68 | gi|9783190|gb|BE525212.1|BE525212 M59H6STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone M59H6 5', mRNA sequence |
blat | 99.3 | 97.6 | GT-tg | orient(+) align: 81721(8)-81830(117)>GT....AG<81910(118)-82055(263)>GT....tg<82522(264)-82671(412) | sim4 | 97.3 | 100.0 | ct-AG | orient(+) align: 81715(1)-81830(117)>GT....AG<81910(118)-82047(255)>ct....AG<82513(256)-82675(415) |
| geneseqer | 97.8 | 100.0 | GT-tg | orient(+) align: 81715(1)-81830(117)>GT....AG<81910(118)-82055(263)>GT....tg<82522(264)-82675(415) | ||
| 69 | gi|26449334|dbj|AK117116.1| Arabidopsis thaliana mRNA, clone: RAFL16-65-H15 |
blat | 99.5 | 99.8 | GT-gg | orient(+) align: 37521(1)-37871(351)>GT....gg<37963(352)-38189(576) | sim4 | 98.6 | 100.0 | GT-gg | orient(+) align: 37521(1)-37871(351)>GT....gg<37963(352)-38189(577) |
| geneseqer | 99.3 | 100.0 | GT-gg | orient(+) align: 37521(1)-37871(351)>GT....gg<37963(352)-38190(577) | ||
| 70 | gi|19877067|gb|AU237898.1|AU237898 AU237898 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-65-H15 5', mRNA sequence |
blat | 99.3 | 99.8 | GT-gg | orient(+) align: 37521(1)-37871(351)>GT....gg<37963(352)-38189(576) | sim4 | 98.6 | 100.0 | GT-gg | orient(+) align: 37521(1)-37871(351)>GT....gg<37963(352)-38189(577) |
| geneseqer | 99.1 | 100.0 | GT-gg | orient(+) align: 37521(1)-37871(351)>GT....gg<37963(352)-38190(577) | ||
| 71 | gi|19796954|gb|AU229004.1|AU229004 AU229004 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-65-H15 3', mRNA sequence |
blat | 98.5 | 100.0 | cc-AC | orient(-) align: 37688(406)-37871(223)>GT....gg<37963(222)-38186(1) | sim4 | 98.0 | 100.0 | cc-AC | orient(-) align: 37688(406)-37871(223)>GT....gg<37963(222)-38186(1) |
| geneseqer | 98.5 | 100.0 | cc-AC | orient(-) align: 37688(406)-37871(223)>GT....gg<37963(222)-38186(1) | ||
| 72 | gi|5843887|gb|AI996982.1|AI996982 701551506 A. thaliana, Columbia Col-0, root-2 Arabidopsis thaliana cDNA clone 701551506, mRNA sequence |
blat | 99.4 | 100.0 | tt-tg | orient(-) align: 81653(531)-81810(375)>ca....aa<81875(374)-82248(1) | sim4 | 98.7 | 100.0 | GT-tg | orient(-) align: 81653(531)-81810(375)>ca....AC<81876(374)-82248(1) |
| geneseqer | 99.4 | 100.0 | GT-ct | orient(-) align: 81653(531)-81811(374)>ag....AC<81876(373)-82248(1) | ||
| 73 | gi|6520228|dbj|AB028231.1| Arabidopsis thaliana CW9 mRNA for PRM1 homolog, complete cds |
blat | 100.0 | 100.0 | aa-AG at-at | orient(+) align: 51409(1)-51505(97)>GT....AG<51728(98)-52097(467)>GT....AG<52171(468)-52606(903)>GT....AG<52721(904)-52867(1050)>GT....AG<52965(1051)-53403(1489)>aa....AG<53512(1490)-54190(2167)>at....at<54665(2168)-54824(2327) | sim4 | 99.5 | 100.0 | ct-AG ga-AG | orient(+) align: 51409(1)-51505(97)>GT....AG<51728(98)-52097(467)>GT....AG<52171(468)-52606(903)>GT....AG<52721(904)-52867(1050)>GT....AG<52965(1051)-53405(1489)>ct....AG<53512(1490)-54186(2163)>ga....AG<54660(2164)-54824(2327) |
| geneseqer | 99.9 | 100.0 | aa-AG ga-AG | orient(+) align: 51409(1)-51505(97)>GT....AG<51728(98)-52097(467)>GT....AG<52171(468)-52606(903)>GT....AG<52721(904)-52867(1050)>GT....AG<52965(1051)-53403(1489)>aa....AG<53512(1490)-54186(2163)>ga....AG<54660(2164)-54824(2327) | ||
| 74 | gi|19878235|gb|AU239066.1|AU239066 AU239066 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-53-C02 5', mRNA sequence |
blat | 99.8 | 96.4 | GT-cg | orient(+) align: 66903(1)-67095(193)>GT....cg<67191(194)-67459(462)>GT....AG<67773(463)-67824(515) | sim4 | 98.0 | 98.7 | ct-ac | orient(+) align: 66903(1)-67090(188)>ct....ac<67189(189)-67459(462)>GT....AG<67773(463)-67836(527) |
| geneseqer | 97.9 | 100.0 | GT-cg | orient(+) align: 66903(1)-67095(193)>GT....cg<67191(194)-67459(462)>GT....AG<67773(463)-67843(534) | ||
| 75 | gi|26451471|dbj|AK118213.1| Arabidopsis thaliana At1g80090 mRNA for unknown protein, complete cds, clone: RAFL19-53-C02 |
blat | 99.9 | 100.0 | GT-cg | orient(+) align: 66903(1)-67095(193)>GT....cg<67191(194)-67459(462)>GT....AG<67773(463)-68016(706)>GT....AG<68093(707)-68197(811)>GT....AG<68278(812)-68704(1238) | sim4 | 99.7 | 100.0 | GT-cg | orient(+) align: 66903(1)-67095(193)>GT....cg<67191(194)-67459(462)>GT....AG<67773(463)-68016(706)>GT....AG<68093(707)-68197(811)>GT....AG<68278(812)-68704(1238) |
| geneseqer | 99.9 | 100.0 | GT-cg | orient(+) align: 66903(1)-67095(193)>GT....cg<67191(194)-67459(462)>GT....AG<67773(463)-68016(706)>GT....AG<68093(707)-68197(811)>GT....AG<68278(812)-68704(1238) | ||
| 76 | gi|25090322|gb|BT002265.1| Arabidopsis thaliana At1g80210/F18B13_28 mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 100120(1221)-100242(1099)>CT....AC<100327(1098)-100381(1044)>CT....AC<100452(1043)-100532(963)>CT....AC<100617(962)-100775(804)>CT....AC<100860(803)-101032(631)>CT....AC<101219(630)-101434(415)>CT....AC<101539(414)-101624(329)>CT....AC<101701(328)-101788(241)>gt....at<101899(240)-102027(112)>CT....AC<102281(111)-102391(1) | sim4 | 99.9 | 100.0 | at-AG | orient(-) align: 100120(1221)-100242(1099)>CT....AC<100327(1098)-100381(1044)>CT....AC<100452(1043)-100532(963)>CT....AC<100617(962)-100775(804)>CT....AC<100860(803)-101032(631)>CT....AC<101219(630)-101434(415)>CT....AC<101539(414)-101624(329)>CT....AC<101701(328)-101786(243)>CT....at<101897(242)-102027(112)>CT....AC<102281(111)-102391(1) |
| geneseqer | 99.9 | 100.0 | at-AG | orient(-) align: 100120(1221)-100242(1099)>CT....AC<100327(1098)-100381(1044)>CT....AC<100452(1043)-100532(963)>CT....AC<100617(962)-100775(804)>CT....AC<100860(803)-101032(631)>CT....AC<101219(630)-101434(415)>CT....AC<101539(414)-101624(329)>CT....AC<101701(328)-101786(243)>CT....at<101897(242)-102027(112)>CT....AC<102281(111)-102391(1) | ||
| 77 | gi|20147354|gb|AY093768.1| Arabidopsis thaliana At1g80210/F18B13_28 mRNA, complete cds |
blat | 100.0 | 100.0 | at-ac | orient(-) align: 99887(1558)-100242(1203)>CT....AC<100327(1202)-100381(1148)>CT....AC<100452(1147)-100532(1067)>CT....AC<100617(1066)-100775(908)>CT....AC<100860(907)-101032(735)>CT....AC<101219(734)-101434(519)>CT....AC<101539(518)-101624(433)>CT....AC<101701(432)-101788(345)>gt....at<101899(344)-102027(216)>CT....AC<102281(215)-102495(1) | sim4 | 99.9 | 100.0 | at-AG | orient(-) align: 99887(1558)-100242(1203)>CT....AC<100327(1202)-100381(1148)>CT....AC<100452(1147)-100532(1067)>CT....AC<100617(1066)-100775(908)>CT....AC<100860(907)-101032(735)>CT....AC<101219(734)-101434(519)>CT....AC<101539(518)-101624(433)>CT....AC<101701(432)-101786(347)>CT....at<101897(346)-102027(216)>CT....AC<102281(215)-102495(1) |
| geneseqer | 99.9 | 100.0 | at-AG | orient(-) align: 99887(1558)-100242(1203)>CT....AC<100327(1202)-100381(1148)>CT....AC<100452(1147)-100532(1067)>CT....AC<100617(1066)-100775(908)>CT....AC<100860(907)-101032(735)>CT....AC<101219(734)-101434(519)>CT....AC<101539(518)-101624(433)>CT....AC<101701(432)-101786(347)>CT....at<101897(346)-102027(216)>CT....AC<102281(215)-102495(1) | ||
| 78 | gi|19866286|gb|AV824226.1|AV824226 AV824226 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-D20 5', mRNA sequence |
blat | 99.8 | 99.8 | at-ac | orient(-) align: 101303(652)-101434(521)>CT....AC<101539(520)-101624(435)>CT....AC<101701(434)-101788(347)>gt....at<101899(346)-102027(218)>CT....AC<102281(217)-102495(2) | sim4 | 99.3 | 100.0 | at-AG | orient(-) align: 101303(652)-101434(521)>CT....AC<101539(520)-101624(435)>CT....AC<101701(434)-101786(349)>CT....at<101897(348)-102027(218)>CT....AC<102281(217)-102496(1) |
| geneseqer | 99.2 | 100.0 | at-AG | orient(-) align: 101303(652)-101434(521)>CT....AC<101539(520)-101624(435)>CT....AC<101701(434)-101786(349)>CT....at<101897(348)-102027(218)>CT....AC<102281(217)-102496(1) | ||
| 79 | gi|19698370|gb|AF414940.1| Arabidopsis thaliana holocarboxylase synthetase hcs2.c mRNA, complete cds |
blat | 99.1 | 100.0 | GT-gg GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-40924(128)>GT....gg<41122(129)-41159(166)>GT....AG<41242(167)-41303(228)>GT....AG<41395(229)-41543(377)>GT....AG<41621(378)-41741(498)>GT....AG<41835(499)-41990(654)>GT....AG<42146(655)-42191(700)>GT....AG<42590(701)-42656(767)>GT....gg<42740(768)-42816(844)>GT....AG<42918(845)-43005(932) | sim4 | 98.8 | 100.0 | GT-gg GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-40924(128)>GT....gg<41122(129)-41159(166)>GT....AG<41242(167)-41303(228)>GT....AG<41395(229)-41543(377)>GT....AG<41621(378)-41741(498)>GT....AG<41835(499)-41990(654)>GT....AG<42146(655)-42191(700)>GT....AG<42590(701)-42656(767)>GT....gg<42740(768)-42816(844)>GT....AG<42918(845)-43005(932) |
| geneseqer | 99.1 | 100.0 | GT-gg GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-40924(128)>GT....gg<41122(129)-41159(166)>GT....AG<41242(167)-41303(228)>GT....AG<41395(229)-41543(377)>GT....AG<41621(378)-41741(498)>GT....AG<41835(499)-41990(654)>GT....AG<42146(655)-42191(700)>GT....AG<42590(701)-42656(767)>GT....gg<42740(768)-42816(844)>GT....AG<42918(845)-43005(932) | ||
| 80 | gi|19698366|gb|AF414938.1| Arabidopsis thaliana holocarboxylase synthetase hcs2.a mRNA, complete cds |
blat | 99.7 | 100.0 | GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-41159(363)>GT....AG<41242(364)-41303(425)>GT....AG<41395(426)-41543(574)>GT....AG<41621(575)-41741(695)>GT....AG<41835(696)-41990(851)>GT....AG<42146(852)-42191(897)>GT....AG<42590(898)-42656(964)>GT....gg<42740(965)-42816(1041)>GT....AG<42918(1042)-43005(1129) | sim4 | 99.6 | 100.0 | GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-41159(363)>GT....AG<41242(364)-41303(425)>GT....AG<41395(426)-41543(574)>GT....AG<41621(575)-41741(695)>GT....AG<41835(696)-41990(851)>GT....AG<42146(852)-42191(897)>GT....AG<42590(898)-42656(964)>GT....gg<42740(965)-42816(1041)>GT....AG<42918(1042)-43005(1129) |
| geneseqer | 99.7 | 100.0 | GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-41159(363)>GT....AG<41242(364)-41303(425)>GT....AG<41395(426)-41543(574)>GT....AG<41621(575)-41741(695)>GT....AG<41835(696)-41990(851)>GT....AG<42146(852)-42191(897)>GT....AG<42590(898)-42656(964)>GT....gg<42740(965)-42816(1041)>GT....AG<42918(1042)-43005(1129) | ||
| 81 | gi|19698382|gb|AF414947.1| Arabidopsis thaliana holocarboxylase synthetase 2 (hcs2) mRNA, partial cds |
blat | 98.4 | 100.0 | GT-gg | orient(+) align: 39994(1)-40099(106)>GT....AG<40244(107)-40326(189)>GT....AG<40697(190)-40772(265)>GT....AG<40886(266)-40924(304)>GT....gg<41122(305)-41159(342)>GT....AG<41242(343)-41280(381) | sim4 | 98.3 | 100.0 | GT-gg | orient(+) align: 39994(1)-40099(106)>GT....AG<40244(107)-40326(189)>GT....AG<40697(190)-40772(265)>GT....AG<40886(266)-40924(304)>GT....gg<41122(305)-41159(342)>GT....AG<41242(343)-41280(381) |
| geneseqer | 98.4 | 100.0 | GT-gg | orient(+) align: 39994(1)-40099(106)>GT....AG<40244(107)-40326(189)>GT....AG<40697(190)-40772(265)>GT....AG<40886(266)-40924(304)>GT....gg<41122(305)-41159(342)>GT....AG<41242(343)-41280(381) | ||
| 82 | gi|19698368|gb|AF414939.1| Arabidopsis thaliana holocarboxylase synthetase hcs2.b mRNA, complete cds |
blat | 99.0 | 100.0 | GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-41159(363)>GT....AG<41232(364)-41303(435)>GT....AG<41395(436)-41543(584)>GT....AG<41621(585)-41741(705)>GT....AG<41835(706)-41990(861)>GT....AG<42146(862)-42191(907)>GT....AG<42590(908)-42656(974)>GT....gg<42740(975)-42816(1051)>GT....AG<42918(1052)-43005(1139) | sim4 | 98.5 | 100.0 | GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-41159(363)>GT....AG<41232(364)-41303(435)>GT....AG<41395(436)-41543(584)>GT....AG<41621(585)-41741(705)>GT....AG<41835(706)-41990(861)>GT....AG<42146(862)-42191(907)>GT....AG<42590(908)-42656(974)>GT....gg<42740(975)-42816(1051)>GT....AG<42918(1052)-43005(1139) |
| geneseqer | 99.0 | 100.0 | GT-gg | orient(+) align: 40684(1)-40772(89)>GT....AG<40886(90)-41159(363)>GT....AG<41232(364)-41303(435)>GT....AG<41395(436)-41543(584)>GT....AG<41621(585)-41741(705)>GT....AG<41835(706)-41990(861)>GT....AG<42146(862)-42191(907)>GT....AG<42590(908)-42656(974)>GT....gg<42740(975)-42816(1051)>GT....AG<42918(1052)-43005(1139) | ||
| 83 | gi|26019644|gb|CA781611.1|CA781611 028G02AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence |
blat | 99.6 | 100.0 | ac-AG | orient(+) align: 37529(1)-37681(151)>GT....AG<38038(152)-38418(532)>ac....AG<39285(533)-39476(724) | sim4 | 99.1 | 100.0 | ca-ac | orient(+) align: 37529(1)-37681(151)>GT....AG<38038(152)-38422(534)>ca....ac<39287(535)-39476(724) |
| geneseqer | 99.6 | 100.0 | ac-AG | orient(+) align: 37529(1)-37681(151)>GT....AG<38038(152)-38418(532)>ac....AG<39285(533)-39476(724) | ||