GeneSeqer. Version of October 12, 2001. Date run: Wed Feb 26 16:42:14 2003 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 12, MinQuality 30. Total number of ESTs: 1 Total sequence length: 449 Minimum sequence length: 449 Maximum sequence length: 449 Length distribution (number of sequences of specified length): < 100: 0 < 200: 0 < 300: 0 < 400: 0 < 500: 1 < 600: 0 < 700: 0 < 800: 0 < 900: 0 < 1000: 0 >=1000: 0 ________________________________________________________________________________ Sequence 1: 50816GAATTCATTTGGCTTTTTTTATTAGTCAACAATACTTTTAGACATTATCTATTATTAACT, from 1 to 99323, both strands analyzed. EST library file: cdna.seq; matching gDNA +strand ... Found all matches, elapsed seconds = 0 Matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: cdna.seq; matching gDNA -strand ... Found all matches, elapsed seconds = 0 Matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: gi-) 1 AATTAAACGA GTTCTACGTA AGAAGGAGAG AGAGAAGAAT GGGTCGCCAG CGTCTCCCTC 61 CAAAGCTCCA GCTGCCTCCA AAACCGATCA TGTCGAGGCT CCAGTCACCG ATGACCAAAT 121 CGGAACCACC GATGACGATG CAGCTCCTAC TCCTGGTGAC GGTGACGTTG CAGTGGCTGG 181 TCCTCTAGGA AGTGACTCCT CGTACGACAA TGCGCCTACA GGCTCTGCTG ATTCTGCCAA 241 AAGCGGTGCG GCAGCTCTTG GCGTCTCTGC GGTCGTCGTT GGTGTTACAT CCATTGCTGG 301 TTCTTTCTTG TTACTCTAAG TTGGGCATTG TTTTATGATA AGAAGGTTAT TTTAAACGAA 361 GATTATTTAT ATGTAAGGAT GATTGTGATG ATCTTGTTGT AATTTGTTTC TCCTTTGTTA 421 GGAGAAACGT TGTCTTTGTA ATAATACTG Predicted gene structure (within gDNA segment 50143 to 49012): Exon 1 49838 49789 ( 50 n); cDNA 1 50 ( 50 n); score: 0.980 Intron 1 49788 49710 ( 79 n); Pd: 0.000 (s: 0.98), Pa: 0.001 (s: 1.00) Exon 2 49709 49312 ( 398 n); cDNA 51 449 ( 399 n); score: 0.995 MATCH 50816GAATTCATTTGGCTTTTTTTATTAGTCAACAATACTTTTAGACATTATCTATTATTAACT- gi- 0.993 448 0.998 C PGS_50816GAATTCATTTGGCTTTTTTTATTAGTCAACAATACTTTTAGACATTATCTATTATTAACT-_gi- (49838 49789,49709 49312) Alignment (genomic DNA sequence = upper lines): AATTAAACGA GTTCTACGTA AGAAGGAGAG AGAGAAGAAT GGGTCGCCAA AACATTGTCG 49779 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AATTAAACGA GTTCTACGTA AGAAGGAGAG AGAGAAGAAT GGGTCGCCAG .......... 50 TCGTGGTTGC CCTCGTCTTC ATGGCCATCA TTGGCCTTGC CGCAGCTGCC TCCTCTCCAT 49719 .......... .......... .......... .......... .......... .......... 50 CTCCTTCAGC GTCTCCCTCC AAAGCTCCAG CTGCCTCCAA AACCGATCAT GTCGAGGCTC 49659 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C GTCTCCCTCC AAAGCTCCAG CTGCCTCCAA AACCGATCAT GTCGAGGCTC 101 CAGTCACCGA TGACCAAATC GGAACCACCG ATGACGATGC AGCTCCTACT CCTGGTGACG 49599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCACCGA TGACCAAATC GGAACCACCG ATGACGATGC AGCTCCTACT CCTGGTGACG 161 GTGACGTTGC AGTGGCTGGT CCTCTAGGAA GTGACTCCTC GTACGACAAT GCGCCTACAG 49539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACGTTGC AGTGGCTGGT CCTCTAGGAA GTGACTCCTC GTACGACAAT GCGCCTACAG 221 GCTCTGCTGA TTCTGCCAAA AGCGGTGCGG CAGCTCTTGG CGTCTCTGCG GTCGTCGTTG 49479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTGCTGA TTCTGCCAAA AGCGGTGCGG CAGCTCTTGG CGTCTCTGCG GTCGTCGTTG 281 GTG-TACATC CATTGCTGGT TCTTTCTTGT TACTCTAAGT TGGGCATTGT TTTATGATAA 49420 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTACATC CATTGCTGGT TCTTTCTTGT TACTCTAAGT TGGGCATTGT TTTATGATAA 341 GAAGGTTATT TTAAACGAAG ATTATTTATA TGTAAGGATG ATTGTGATGA TCTTGTTGTA 49360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTTATT TTAAACGAAG ATTATTTATA TGTAAGGATG ATTGTGATGA TCTTGTTGTA 401 ATTTGTTTCT CCTTTGTTAG GAGAAACGTT GTCTTTGTAA TAATACTG 49312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATTTGTTTCT CCTTTGTTAG GAGAAACGTT GTCTTTGTAA TAATACTG 449 Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1): PGL 1 (- strand): 49838 49312 AGS-1 (49838 49789,49709 49312) SCR (e 0.980 d 0.000 a 0.001,e 0.995) Exon 1 49838 49789 ( 50 n); score: 0.980 Intron 1 49788 49710 ( 79 n); Pd: 0.000 Pa: 0.001 Exon 2 49709 49312 ( 398 n); score: 0.995 PGS (49838 49789,49709 49312) gi- 3-phase translation of AGS-1 (-strand): . . . . . : . 49838 AATTAAACGAGTTCTACGTAAGAAGGAGAGAGAGAAGAATGGGTCGCCAA : CGTCTCCCTC N - T S S T - E G E R E E W V A N : V S L I K R V L R K K E R E K N G S P : T S P S L N E F Y V R R R E R R M G R Q : R L P . . . . . . 49699 CAAAGCTCCAGCTGCCTCCAAAACCGATCATGTCGAGGCTCCAGTCACCGATGACCAAAT Q S S S C L Q N R S C R G S S H R - P N K A P A A S K T D H V E A P V T D D Q I P K L Q L P P K P I M S R L Q S P M T K . . . . . . 49639 CGGAACCACCGATGACGATGCAGCTCCTACTCCTGGTGACGGTGACGTTGCAGTGGCTGG R N H R - R C S S Y S W - R - R C S G W G T T D D D A A P T P G D G D V A V A G S E P P M T M Q L L L L V T V T L Q W L . . . . . . 49579 TCCTCTAGGAAGTGACTCCTCGTACGACAATGCGCCTACAGGCTCTGCTGATTCTGCCAA S S R K - L L V R Q C A Y R L C - F C Q P L G S D S S Y D N A P T G S A D S A K V L - E V T P R T T M R L Q A L L I L P . . . . . . 49519 AAGCGGTGCGGCAGCTCTTGGCGTCTCTGCGGTCGTCGTTGGTGTACATCCATTGCTGGT K R C G S S W R L C G R R W C T S I A G S G A A A L G V S A V V V G V H P L L V K A V R Q L L A S L R S S L V Y I H C W . . . . . . 49459 TCTTTCTTGTTACTCTAAGTTGGGCATTGTTTTATGATAAGAAGGTTATTTTAAACGAAG S F L L L - V G H C F M I R R L F - T K L S C Y S K L G I V L - - E G Y F K R R F F L V T L S W A L F Y D K K V I L N E . . . . . . 49399 ATTATTTATATGTAAGGATGATTGTGATGATCTTGTTGTAATTTGTTTCTCCTTTGTTAG I I Y M - G - L - - S C C N L F L L C - L F I C K D D C D D L V V I C F S F V R D Y L Y V R M I V M I L L - F V S P L L . . . 49339 GAGAAACGTTGTCTTTGTAATAATACTG E K R C L C N N T R N V V F V I I L G E T L S L - - Y Maximal non-overlapping open reading frames (>= 64 codons): >50816GAATTCATTTGGCTTTTTTTATTAGTCAACAATACTTTTAGACATTATCTATTATTAACT-_PGL-1_AGS-1_PPS_1 (49837 49789,49709 49423) (frame '2'; 333 bp, 111 residues) 1 IKRVLRKKER EKNGSPTSPS KAPAASKTDH VEAPVTDDQI GTTDDDAAPT PGDGDVAVAG 61 PLGSDSSYDN APTGSADSAK SGAAALGVSA VVVGVHPLLV LSCYSKLGIV L-