Arabidopsis thaliana Genomic Sequencing Status

Completed Clones Clones in Progress Clones in Preparation Notes

Clones currently in progress

Clone Names are the 384 well addresses: T=TAMU library, F=IGF library. For each BAC, the External DB column is linked to AtDB, and the GenBank column is linked to the unfinished sequence submission in the HTGS division of GenBank. Size is an estimate of the size of the insert. Accurate size is entered when complete. Map Position is either the closest marker, or the YAC from the Goodman physical map. Shotgun Sequencing involves high throughput sequencing of clones in the library to approximately 7-fold coverage. Closure is the process of assembly, editing and gap closure. Annotation is the final step and involves sequence analysis to find and/or predict the location of genes within the sequence.

Clone name Chromosome External DB Size (kb) Map position Sequencing Began Current Stage GenBank

F2O10 III AtDB 62 SGCSNP165 Annotation AC013454

F13K9 I AtDB 126 m355 Annotation AC069471

T12I7 I AtDB 35 mi185 Annotation -

T13B17 III AtDB 32 Annotation -

T22C2 III AtDB 68 Annotation -

T8N9 III AtDB 37 Annotation -

F9P7 I AtDB 11 Annotation AC074308

F13E17 I AtDB 77 mi72 Annotation AC074284

T6C20 II AtDB 60 g4532 10/09/98 Closure AC005898

F23H14 II AtDB 91 mi398 01/19/99 Annotation AC006837

F27B22 II AtDB 100 mi421 03/15/99 Shotgun -

F15B18 II AtDB 100 NOR2 07/15/99 Closure -

T28G19 III AtDB 100 CEN3 07/28/99 Closure AC009328

T25F15 III AtDB 100 CEN3 08/06/99 Closure AC009529

T18B3 III AtDB 100 CEN3 09/07/99 Closure AC011624

T9L24 I AtDB 0 nga111 10/01/99 Annotation AC012396

F4N21 AtDB 96 10/14/99 Annotation AC013288

F21A14 III AtDB 100 CEN3 11/05/99 Closure AC016828

T14H22 unknown AtDB 100 unknown 12/10/99 Closure -

T18I24,F8A12,F1I14 I AtDB 1000 mi259 12/16/99 Closure -

T24G4 unknown AtDB 100 unknown 12/16/99 Closure -

F2H10 AtDB 17 01/03/00 Annotation AC026757

T17I16 unknown AtDB 100 unknown 01/06/00 Closure -

T24B24 unknown AtDB 100 unknown 01/06/00 Closure -

F19C24 AtDB 124 01/14/00 Annotation AC025294

T24A23 unknown AtDB 100 unknown 01/17/00 Closure -

T6J16 unknown AtDB 100 unknown 02/09/00 Closure -

T20G10 unknown AtDB 100 unknown 02/09/00 Closure -

T8D8 I AtDB 55 mi133 02/17/00 Annotation AC025815

T18H23 unknown AtDB 100 unknown 02/17/00 Closure -

F22N4 III AtDB 100 g4547 02/23/00 Closure -

F2P24 I AtDB 1 m532 02/23/00 Annotation -

T4K22 AtDB 82 02/24/00 Annotation AC025295

T13M1 unknown AtDB 100 unknown 02/28/00 Closure -

T2N13 unknown AtDB 100 unknown 02/28/00 Closure -

F3P3 unknown AtDB 100 unknown 02/29/00 Closure -

F3A14 I AtDB 24 mi342 02/29/00 Annotation AC066690

T18C15 AtDB 100 02/29/00 Closure AC074110

F7A10 I AtDB 101 nga128 02/29/00 Annotation AC027034

F10O5 I AtDB 90 mi72 03/03/00 Annotation AC027032

F9M8 I AtDB 100 mi72 03/03/00 Closure -

T4M14 AtDB 32 03/07/00 Annotation AC027036

T32O22 I AtDB 42 mi342 03/15/00 Annotation -

T2J15 I AtDB 96 mi291 03/16/00 Annotation AC051631

T11I4 I AtDB 100 mi72 03/16/00 Closure -

T18N24 AtDB 100 03/16/00 Closure AC074111

T1E4 I AtDB 0 mi423 03/17/00 Annotation AC069299

T8E24 III AtDB 51 mi403 03/17/00 Annotation AC036106

F19K6 I AtDB 75 m213 03/17/00 Annotation AC037424

T18F15 I AtDB 100 mi72 03/17/00 Closure -

F13N6 I AtDB 90 mi259 03/23/00 Annotation AC058785

F11B9 AtDB 103 03/29/00 Annotation AC073395

F25O15 AtDB 100 03/29/00 Closure AC074108

F1O3 I AtDB 74 mi342 03/31/00 Annotation AC068901

F14G9 AtDB 111 04/04/00 Annotation AC069159

F5M6, F9D3, F3C3, F27G20 I AtDB 400 UFO 04/05/00 Closure -

F13A11 I AtDB 95 GAPB 04/10/00 Annotation AC068324

F28L5 I AtDB 48 m355 04/10/00 Annotation -

F2C1 AtDB 100 04/11/00 Closure AC074109

F28P5 AtDB 38 04/12/00 Annotation AC069273

F7F7 AtDB 74 04/19/00 Annotation AC069470

T7N22 AtDB 44 04/24/00 Annotation AC073944

F14C21 AtDB 103 04/24/00 Annotation AC069144

F10D13 I AtDB 107 mi353 04/25/00 Annotation AC073178

F19C17 AtDB 100 05/01/00 Closure AC073433

T15K4 I AtDB 33 m355 05/03/00 Annotation -

T9I1 I AtDB 99 mi423 05/03/00 Annotation AC069160

T3M22 I AtDB 100 mi342 05/04/00 Closure -

F12P21 AtDB 100 05/04/00 Closure AC073506

F8P13 I AtDB 100 m213 05/05/00 Closure -

T15O15 AtDB 100 05/15/00 Closure AC074227

T2H7 AtDB 72 05/15/00 Annotation AC074176

T18I3 I AtDB 17 nga128 05/15/00 Annotation -

F16I10 I AtDB 4 mi342 05/16/00 Annotation -

F7O12 I AtDB 39 m532 05/17/00 Annotation -

F16M22 AtDB 61 05/19/00 Annotation AC073943

T22L5 ? AtDB 100 ? 05/31/00 Shotgun -

T7O23 AtDB 100 06/06/00 Closure AC074228

F11I4 AtDB 80 06/08/00 Annotation AC073555

F27B9 AtDB 100 06/14/00 Closure AC074226

F3M6 ? AtDB 100 ? 06/26/00 Shotgun -

T12O21 ? AtDB 100 ? 07/19/00 Closure AC074309

F27M3 ? AtDB 100 ? 07/19/00 Closure AC074360

T8G24 ? AtDB 29 ? 07/24/00 Annotation AC074395

F5M6 ? AtDB 100 ? 07/24/00 Shotgun -

F2J7 ? AtDB 100 ? 07/26/00 Closure -

F4M15 ? AtDB 100 ? 07/26/00 Shotgun -

F4F7 ? AtDB 100 ? 07/31/00 Shotgun -

Clone name	Chromosome	External DB	Size (kb)	Map position	Sequencing Began	Current Stage	GenBank
F2O10	III	AtDB	62	SGCSNP165		Annotation	AC013454
F13K9	I	AtDB	126	m355		Annotation	AC069471
T12I7	I	AtDB	35	mi185		Annotation	-
T13B17	III	AtDB	32			Annotation	-
T22C2	III	AtDB	68			Annotation	-
T8N9	III	AtDB	37			Annotation	-
F9P7	I	AtDB	11			Annotation	AC074308
F13E17	I	AtDB	77	mi72		Annotation	AC074284
T6C20	II	AtDB	60	g4532	10/09/98	Closure	AC005898
F23H14	II	AtDB	91	mi398	01/19/99	Annotation	AC006837
F27B22	II	AtDB	100	mi421	03/15/99	Shotgun	-
F15B18	II	AtDB	100	NOR2	07/15/99	Closure	-
T28G19	III	AtDB	100	CEN3	07/28/99	Closure	AC009328
T25F15	III	AtDB	100	CEN3	08/06/99	Closure	AC009529
T18B3	III	AtDB	100	CEN3	09/07/99	Closure	AC011624
T9L24	I	AtDB	0	nga111	10/01/99	Annotation	AC012396
F4N21		AtDB	96		10/14/99	Annotation	AC013288
F21A14	III	AtDB	100	CEN3	11/05/99	Closure	AC016828
T14H22	unknown	AtDB	100	unknown	12/10/99	Closure	-
T18I24,F8A12,F1I14	I	AtDB	1000	mi259	12/16/99	Closure	-
T24G4	unknown	AtDB	100	unknown	12/16/99	Closure	-
F2H10		AtDB	17		01/03/00	Annotation	AC026757
T17I16	unknown	AtDB	100	unknown	01/06/00	Closure	-
T24B24	unknown	AtDB	100	unknown	01/06/00	Closure	-
F19C24		AtDB	124		01/14/00	Annotation	AC025294
T24A23	unknown	AtDB	100	unknown	01/17/00	Closure	-
T6J16	unknown	AtDB	100	unknown	02/09/00	Closure	-
T20G10	unknown	AtDB	100	unknown	02/09/00	Closure	-
T8D8	I	AtDB	55	mi133	02/17/00	Annotation	AC025815
T18H23	unknown	AtDB	100	unknown	02/17/00	Closure	-
F22N4	III	AtDB	100	g4547	02/23/00	Closure	-
F2P24	I	AtDB	1	m532	02/23/00	Annotation	-
T4K22		AtDB	82		02/24/00	Annotation	AC025295
T13M1	unknown	AtDB	100	unknown	02/28/00	Closure	-
T2N13	unknown	AtDB	100	unknown	02/28/00	Closure	-
F3P3	unknown	AtDB	100	unknown	02/29/00	Closure	-
F3A14	I	AtDB	24	mi342	02/29/00	Annotation	AC066690
T18C15		AtDB	100		02/29/00	Closure	AC074110
F7A10	I	AtDB	101	nga128	02/29/00	Annotation	AC027034
F10O5	I	AtDB	90	mi72	03/03/00	Annotation	AC027032
F9M8	I	AtDB	100	mi72	03/03/00	Closure	-
T4M14		AtDB	32		03/07/00	Annotation	AC027036
T32O22	I	AtDB	42	mi342	03/15/00	Annotation	-
T2J15	I	AtDB	96	mi291	03/16/00	Annotation	AC051631
T11I4	I	AtDB	100	mi72	03/16/00	Closure	-
T18N24		AtDB	100		03/16/00	Closure	AC074111
T1E4	I	AtDB	0	mi423	03/17/00	Annotation	AC069299
T8E24	III	AtDB	51	mi403	03/17/00	Annotation	AC036106
F19K6	I	AtDB	75	m213	03/17/00	Annotation	AC037424
T18F15	I	AtDB	100	mi72	03/17/00	Closure	-
F13N6	I	AtDB	90	mi259	03/23/00	Annotation	AC058785
F11B9		AtDB	103		03/29/00	Annotation	AC073395
F25O15		AtDB	100		03/29/00	Closure	AC074108
F1O3	I	AtDB	74	mi342	03/31/00	Annotation	AC068901
F14G9		AtDB	111		04/04/00	Annotation	AC069159
F5M6, F9D3, F3C3, F27G20	I	AtDB	400	UFO	04/05/00	Closure	-
F13A11	I	AtDB	95	GAPB	04/10/00	Annotation	AC068324
F28L5	I	AtDB	48	m355	04/10/00	Annotation	-
F2C1		AtDB	100		04/11/00	Closure	AC074109
F28P5		AtDB	38		04/12/00	Annotation	AC069273
F7F7		AtDB	74		04/19/00	Annotation	AC069470
T7N22		AtDB	44		04/24/00	Annotation	AC073944
F14C21		AtDB	103		04/24/00	Annotation	AC069144
F10D13	I	AtDB	107	mi353	04/25/00	Annotation	AC073178
F19C17		AtDB	100		05/01/00	Closure	AC073433
T15K4	I	AtDB	33	m355	05/03/00	Annotation	-
T9I1	I	AtDB	99	mi423	05/03/00	Annotation	AC069160
T3M22	I	AtDB	100	mi342	05/04/00	Closure	-
F12P21		AtDB	100		05/04/00	Closure	AC073506
F8P13	I	AtDB	100	m213	05/05/00	Closure	-
T15O15		AtDB	100		05/15/00	Closure	AC074227
T2H7		AtDB	72		05/15/00	Annotation	AC074176
T18I3	I	AtDB	17	nga128	05/15/00	Annotation	-
F16I10	I	AtDB	4	mi342	05/16/00	Annotation	-
F7O12	I	AtDB	39	m532	05/17/00	Annotation	-
F16M22		AtDB	61		05/19/00	Annotation	AC073943
T22L5	?	AtDB	100	?	05/31/00	Shotgun	-
T7O23		AtDB	100		06/06/00	Closure	AC074228
F11I4		AtDB	80		06/08/00	Annotation	AC073555
F27B9		AtDB	100		06/14/00	Closure	AC074226
F3M6	?	AtDB	100	?	06/26/00	Shotgun	-
T12O21	?	AtDB	100	?	07/19/00	Closure	AC074309
F27M3	?	AtDB	100	?	07/19/00	Closure	AC074360
T8G24	?	AtDB	29	?	07/24/00	Annotation	AC074395
F5M6	?	AtDB	100	?	07/24/00	Shotgun	-
F2J7	?	AtDB	100	?	07/26/00	Closure	-
F4M15	?	AtDB	100	?	07/26/00	Shotgun	-
F4F7	?	AtDB	100	?	07/31/00	Shotgun	-