Rickettsiales comparative database 

about this site

Welcome to the Rickettsiales Comparative Database (RCD); this web site provides access to some of the comparative data published in the PLoS Genetics paper entitled "Comparative Genomics of Emerging Human Ehrlichiosis Agents". This project was supported by National Institutes of Health grant R01 AI47885 to Yasuko Rikihisa.

database contents

Anaplasma marginale St Maries NC_004842 Anaplasma phagocytophilum HZ CP000235 Bartonella henselae Houston-1 NC_005956 Brucella suis 1330 NC_004310, NC_004311 Buchnera sp. APS NC_002528, NC_002252, NC_002253 Candidatus Blochmannia floridanus NC_005061 Chlamydia pneumoniae AR39 NC_002179 Coxiella burnetii RSA 493 NC_002971, NC_004704 Ehrlichia canis Jake NC_007354, ZP_00210380 Ehrlichia chaffeensis Arkansas CP000236 Ehrlichia ruminantium Gardel NC_006831

Ehrlichia ruminantium Welgevonden (France) NC_006832 Ehrlichia ruminantium Welgevonden (South Africa) NC_005295 Neorickettsia sennetsu Miyayama CP000237 Rickettsia conorii Malish 7 NC_003103 Rickettsia felis URRWXCal2 NC_007109, NC_007110, NC_007111 Rickettsia prowazekii Madrid E NC_000963 Rickettsia typhi Wilmington NC_006142 Tropheryma whipplei str. Twist NC_004572 Wigglesworthia glossinidia brevipalpis NC_004344 Wolbachia pipientis wMel NC_002978 Wolbachia sp. endosymbiont of Brugia malayi NC_006833

data and tools

• Individual COG/cluster viewer
  
  Display the COG/ortholog cluster with this ID:  (e.g., 696043, 696692)
• List COGs by phylogenetic profile
  
  List COGs/ortholog clusters that include a specific subset of the RCD genomes.
• List COG singletons
  
  List "singleton" proteins that were not clustered by the COGs/ortholog clusters.
• Multi-genome synteny display
  
  A user-customizable graphical display of conserved synteny across 2 or more RCD genomes.
• Keyword search for proteins/genes
  
  Enter one or more keywords or ids separated by spaces and click on "search":
  (e.g., "histone", "deacetylase", "Bfl280", "AAZ68949.1")
  [ case-sensitive]

external links

• "Comparative Genomics of Emerging Human Ehrlichiosis Agents" in PLoS Genetics
• Ehrlichiae Research Laboratory at Ohio State University (P.I. Yasuko Rikihisa)
• A CDC article on "Human Ehrlichioses in the United States"
• NSF Wolbachia FIBR Project